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November 18, 2024 14:02
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netflow log for running baysor
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| Nov-17 09:39:19.048 [main] DEBUG nextflow.cli.Launcher - $> nextflow run maximilian-heeg/xenium-segmentation -r v0.3 --xenium_path /n/fs/ragr-data/users/hirak/10x_colorectal/xenium | |
| Nov-17 09:39:19.289 [main] DEBUG nextflow.cli.CmdRun - N E X T F L O W ~ version 24.10.0 | |
| Nov-17 09:39:19.473 [main] DEBUG nextflow.plugin.PluginsFacade - Setting up plugin manager > mode=prod; embedded=false; plugins-dir=/n/fs/ragr-data/users/hirak/.nextflow/plugins; core-plugins: [email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected],[email protected] | |
| Nov-17 09:39:19.493 [main] INFO o.pf4j.DefaultPluginStatusProvider - Enabled plugins: [] | |
| Nov-17 09:39:19.494 [main] INFO o.pf4j.DefaultPluginStatusProvider - Disabled plugins: [] | |
| Nov-17 09:39:19.497 [main] INFO org.pf4j.DefaultPluginManager - PF4J version 3.12.0 in 'deployment' mode | |
| Nov-17 09:39:19.521 [main] INFO org.pf4j.AbstractPluginManager - No plugins | |
| Nov-17 09:39:19.720 [main] DEBUG nextflow.scm.ProviderConfig - Using SCM config path: /n/fs/ragr-data/users/hirak/.nextflow/scm | |
| Nov-17 09:39:19.900 [main] DEBUG nextflow.scm.RepositoryFactory - Found Git repository result: [RepositoryFactory] | |
| Nov-17 09:39:19.937 [main] INFO nextflow.cli.CmdRun - Pulling maximilian-heeg/xenium-segmentation ... | |
| Nov-17 09:39:19.943 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/maximilian-heeg/xenium-segmentation/contents/nextflow.config?ref=v0.3 | |
| Nov-17 09:39:22.060 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/maximilian-heeg/xenium-segmentation/contents/main.nf?ref=v0.3 | |
| Nov-17 09:39:22.180 [main] DEBUG nextflow.scm.RepositoryProvider - Request [credentials -:-] -> https://api.github.com/repos/maximilian-heeg/xenium-segmentation | |
| Nov-17 09:39:22.273 [main] DEBUG nextflow.scm.AssetManager - Pulling maximilian-heeg/xenium-segmentation -- Using remote clone url: https://github.com/maximilian-heeg/xenium-segmentation.git | |
| Nov-17 09:39:29.856 [main] INFO nextflow.cli.CmdRun - downloaded from https://github.com/maximilian-heeg/xenium-segmentation.git | |
| Nov-17 09:39:29.880 [main] DEBUG nextflow.config.ConfigBuilder - Found config base: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/nextflow.config | |
| Nov-17 09:39:29.883 [main] DEBUG nextflow.config.ConfigBuilder - Parsing config file: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/nextflow.config | |
| Nov-17 09:39:29.891 [main] DEBUG n.secret.LocalSecretsProvider - Secrets store: /n/fs/ragr-data/users/hirak/.nextflow/secrets/store.json | |
| Nov-17 09:39:29.902 [main] DEBUG nextflow.secret.SecretsLoader - Discovered secrets providers: [nextflow.secret.LocalSecretsProvider@357bc488] - activable => nextflow.secret.LocalSecretsProvider@357bc488 | |
| Nov-17 09:39:29.927 [main] DEBUG nextflow.config.ConfigBuilder - Applying config profile: `standard` | |
| Nov-17 09:39:30.058 [main] DEBUG nextflow.cli.CmdRun - Applied DSL=2 by global default | |
| Nov-17 09:39:30.059 [main] DEBUG nextflow.cli.CmdRun - Launching `https://github.com/maximilian-heeg/xenium-segmentation` [high_brahmagupta] DSL2 - revision: 81bd02ba47 [v0.3] | |
| Nov-17 09:39:30.060 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins default=[] | |
| Nov-17 09:39:30.061 [main] DEBUG nextflow.plugin.PluginsFacade - Plugins resolved requirement=[] | |
| Nov-17 09:39:30.454 [main] DEBUG nextflow.Session - Session UUID: ca8bc48a-80fb-4571-8b12-c784ed77cf45 | |
| Nov-17 09:39:30.454 [main] DEBUG nextflow.Session - Run name: high_brahmagupta | |
| Nov-17 09:39:30.454 [main] DEBUG nextflow.Session - Executor pool size: 56 | |
| Nov-17 09:39:30.563 [main] DEBUG nextflow.file.FilePorter - File porter settings maxRetries=3; maxTransfers=50; pollTimeout=null | |
| Nov-17 09:39:30.568 [main] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'FileTransfer' minSize=10; maxSize=168; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false | |
| Nov-17 09:39:30.586 [main] DEBUG nextflow.cli.CmdRun - | |
| Version: 24.10.0 build 5928 | |
| Created: 27-10-2024 18:36 UTC (14:36 EDT) | |
| System: Linux 5.14.0-427.22.1.el9_4.x86_64 | |
| Runtime: Groovy 4.0.23 on OpenJDK 64-Bit Server VM 11.0.23+9-LTS | |
| Encoding: UTF-8 (UTF-8) | |
| Process: [email protected] [128.112.155.182] | |
| CPUs: 56 - Mem: 1007.3 GB (709 GB) - Swap: 4 GB (4 GB) | |
| Nov-17 09:39:30.618 [main] DEBUG nextflow.Session - Work-dir: /n/fs/ragr-data/users/hirak/work [nfs] | |
| Nov-17 09:39:30.619 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/bin | |
| Nov-17 09:39:30.661 [main] DEBUG nextflow.executor.ExecutorFactory - Extension executors providers=[] | |
| Nov-17 09:39:30.671 [main] DEBUG nextflow.Session - Observer factory: DefaultObserverFactory | |
| Nov-17 09:39:31.115 [main] DEBUG nextflow.cache.CacheFactory - Using Nextflow cache factory: nextflow.cache.DefaultCacheFactory | |
| Nov-17 09:39:31.169 [main] DEBUG nextflow.util.CustomThreadPool - Creating default thread pool > poolSize: 57; maxThreads: 1000 | |
| Nov-17 09:39:31.707 [main] DEBUG nextflow.Session - Session start | |
| Nov-17 09:39:31.709 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow started -- trace file: /n/fs/ragr-data/users/hirak/results/pipeline_info/trace_report_2024-11-17_09-39-29.txt | |
| Nov-17 09:39:31.893 [main] DEBUG nextflow.script.ScriptRunner - > Launching execution | |
| Nov-17 09:39:32.663 [main] INFO nextflow.Nextflow - | |
| -------------------------------------------------------------------- | |
| __ __ _ | |
| \ \ / / (_) | |
| \ V / ___ _ __ _ _ _ _ __ ___ | |
| > < / _ \ '_ \| | | | | '_ ` _ \ | |
| / . \ __/ | | | | |_| | | | | | | _ _ _ | |
| /_/ \_\___|_| |_|_|\__,_|_| |_| |_| | | | | (_) | |
| ___ ___ __ _ _ __ ___ ___ _ __ | |_ __ _| |_ _ ___ _ __ | |
| / __|/ _ \/ _` | '_ ` _ \ / _ \ '_ \| __/ _` | __| |/ _ \| '_ \ | |
| \__ \ __/ (_| | | | | | | __/ | | | || (_| | |_| | (_) | | | | | |
| |___/\___|\__, |_| |_| |_|\___|_| |_|\__\__,_|\__|_|\___/|_| |_| | |
| __/ | | |
| |___/ | |
| -------------------------------------------------------------------- | |
| (c) Maximilian Heeg, 2023-2024 | |
| https://github.com/maximilian-heeg/xenium-segmentation | |
| -------------------------------------------------------------------- | |
| Nov-17 09:39:32.796 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:32.796 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:32.802 [main] DEBUG nextflow.executor.Executor - [warm up] executor > local | |
| Nov-17 09:39:32.832 [main] DEBUG n.processor.LocalPollingMonitor - Creating local task monitor for executor 'local' > cpus=56; memory=1007.3 GB; capacity=56; pollInterval=100ms; dumpInterval=5m | |
| Nov-17 09:39:32.844 [main] DEBUG n.processor.TaskPollingMonitor - >>> barrier register (monitor: local) | |
| Nov-17 09:39:32.981 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:32.982 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:32.993 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:32.993 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.017 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.018 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.043 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.044 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.060 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.060 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.066 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.067 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.074 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.074 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.096 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.096 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.106 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.106 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.113 [main] DEBUG nextflow.executor.ExecutorFactory - << taskConfig executor: null | |
| Nov-17 09:39:33.113 [main] DEBUG nextflow.executor.ExecutorFactory - >> processorType: 'local' | |
| Nov-17 09:39:33.117 [main] DEBUG nextflow.Session - Workflow process names [dsl2]: dumpParameters, Baysor:BaysorConfig:create, getNumberOfTranscripts, Baysor:getNumberOfTranscripts, getMedianTranscriptsPerCell, Baysor:BaysorConfig:estimateMinMoleculesPerCell:getMedianTranscriptsPerCell, Baysor:tileXenium, Baysor:mergeTiles, Report:scanpy, diagnostics, Report:dumpParameters, tileXenium, Report:build, build, Report:diagnostics, Report:boundaries, runBaysor, scanpy, create, boundaries, Baysor:runBaysor, mergeTiles | |
| Nov-17 09:39:33.118 [main] DEBUG nextflow.Session - Igniting dataflow network (21) | |
| Nov-17 09:39:33.145 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Baysor:BaysorConfig:estimateMinMoleculesPerCell:getMedianTranscriptsPerCell | |
| Nov-17 09:39:33.145 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Baysor:BaysorConfig:create | |
| Nov-17 09:39:33.146 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Baysor:tileXenium | |
| Nov-17 09:39:33.146 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Baysor:getNumberOfTranscripts | |
| Nov-17 09:39:33.146 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Baysor:runBaysor | |
| Nov-17 09:39:33.147 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Baysor:mergeTiles | |
| Nov-17 09:39:33.147 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Report:dumpParameters | |
| Nov-17 09:39:33.148 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Report:diagnostics | |
| Nov-17 09:39:33.148 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Report:scanpy | |
| Nov-17 09:39:33.150 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Report:boundaries | |
| Nov-17 09:39:33.151 [main] DEBUG nextflow.processor.TaskProcessor - Starting process > Report:build | |
| Nov-17 09:39:33.152 [main] DEBUG nextflow.script.ScriptRunner - Parsed script files: | |
| Script_05fb54eb8d0fe841: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/./modules/Baysor.nf | |
| Script_e8dc4a50a271567f: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/./modules/../modules/BaysorConfig.nf | |
| Script_7a4e31d22a647da2: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/./modules/Report.nf | |
| Script_1edbae7a2deae6c4: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/./modules/Logo.nf | |
| Script_6e367c0f1e312726: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/main.nf | |
| Nov-17 09:39:33.152 [main] DEBUG nextflow.script.ScriptRunner - > Awaiting termination | |
| Nov-17 09:39:33.152 [main] DEBUG nextflow.Session - Session await | |
| Nov-17 09:39:33.358 [Actor Thread 34] DEBUG nextflow.container.SingularityCache - Singularity found local store for image=docker://maximilianheeg/tile-xenium:v0.1.2; path=/n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-tile-xenium-v0.1.2.img | |
| Nov-17 09:39:33.364 [Actor Thread 35] WARN nextflow.container.SingularityCache - Singularity cache directory has not been defined -- Remote image will be stored in the path: /n/fs/ragr-data/users/hirak/work/singularity -- Use the environment variable NXF_SINGULARITY_CACHEDIR to specify a different location | |
| Nov-17 09:39:33.365 [Actor Thread 35] INFO nextflow.container.SingularityCache - Pulling Singularity image docker://maximilianheeg/docker-scanpy:v1.9.5_pyarrow [cache /n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-docker-scanpy-v1.9.5_pyarrow.img] | |
| Nov-17 09:39:33.453 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:39:33.454 [Task submitter] INFO nextflow.Session - [c8/855da5] Submitted process > Report:dumpParameters | |
| Nov-17 09:39:33.479 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:39:33.479 [Task submitter] INFO nextflow.Session - [35/974e56] Submitted process > Baysor:tileXenium (1) | |
| Nov-17 09:39:33.681 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 3; name: Report:dumpParameters; status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/c8/855da5f5af038a14c6adb92c8f11cf] | |
| Nov-17 09:39:33.682 [Task monitor] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'TaskFinalizer' minSize=10; maxSize=168; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false | |
| Nov-17 09:41:58.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 2; name: Baysor:tileXenium (1); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/35/974e563b4db174c170cfbdd1c8956d] | |
| Nov-17 09:41:58.060 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:41:58.061 [Task submitter] INFO nextflow.Session - [2c/62cbf2] Submitted process > Baysor:getNumberOfTranscripts (3) | |
| Nov-17 09:41:58.071 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:41:58.072 [Task submitter] INFO nextflow.Session - [71/da1ea6] Submitted process > Baysor:getNumberOfTranscripts (1) | |
| Nov-17 09:41:58.085 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:41:58.085 [Task submitter] INFO nextflow.Session - [20/a4183d] Submitted process > Baysor:getNumberOfTranscripts (2) | |
| Nov-17 09:41:58.095 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:41:58.095 [Task submitter] INFO nextflow.Session - [97/b1048b] Submitted process > Baysor:getNumberOfTranscripts (4) | |
| Nov-17 09:42:17.841 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 6; name: Baysor:getNumberOfTranscripts (3); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2c/62cbf2df2bd49b3c10623e30727316] | |
| Nov-17 09:42:34.028 [Actor Thread 35] DEBUG nextflow.container.SingularityCache - Singularity pull complete image=docker://maximilianheeg/docker-scanpy:v1.9.5_pyarrow path=/n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-docker-scanpy-v1.9.5_pyarrow.img | |
| Nov-17 09:42:34.060 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:42:34.061 [Task submitter] INFO nextflow.Session - [a3/43e273] Submitted process > Baysor:BaysorConfig:estimateMinMoleculesPerCell:getMedianTranscriptsPerCell (1) | |
| Nov-17 09:42:37.977 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 4; name: Baysor:getNumberOfTranscripts (1); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/71/da1ea65b1cf6ddfd7c2cd7be4f5352] | |
| Nov-17 09:42:39.327 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 7; name: Baysor:getNumberOfTranscripts (4); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/97/b1048b41cc693582c764f610deeb0f] | |
| Nov-17 09:42:47.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 5; name: Baysor:getNumberOfTranscripts (2); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/20/a4183dd0a76e0ac7d1e8957df5d46b] | |
| Nov-17 09:44:33.015 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 1; name: Baysor:BaysorConfig:estimateMinMoleculesPerCell:getMedianTranscriptsPerCell (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/a3/43e27354227565895d7c65ee13bfd0] | |
| Nov-17 09:44:36.309 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 1; name: Baysor:BaysorConfig:estimateMinMoleculesPerCell:getMedianTranscriptsPerCell (1); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/a3/43e27354227565895d7c65ee13bfd0] | |
| Nov-17 09:44:36.351 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:44:36.351 [Task submitter] INFO nextflow.Session - [c2/0d427c] Submitted process > Baysor:BaysorConfig:create (1) | |
| Nov-17 09:44:36.555 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 8; name: Baysor:BaysorConfig:create (1); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/c2/0d427c884bc5ce8a835384ddca36c3] | |
| Nov-17 09:44:36.568 [Actor Thread 51] WARN nextflow.container.SingularityCache - Singularity cache directory has not been defined -- Remote image will be stored in the path: /n/fs/ragr-data/users/hirak/work/singularity -- Use the environment variable NXF_SINGULARITY_CACHEDIR to specify a different location | |
| Nov-17 09:44:36.568 [Actor Thread 51] INFO nextflow.container.SingularityCache - Pulling Singularity image docker://maximilianheeg/baysor:v0.6.2 [cache /n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-baysor-v0.6.2.img] | |
| Nov-17 09:47:50.354 [Actor Thread 51] DEBUG nextflow.container.SingularityCache - Singularity pull complete image=docker://maximilianheeg/baysor:v0.6.2 path=/n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-baysor-v0.6.2.img | |
| Nov-17 09:47:50.378 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:47:50.378 [Task submitter] INFO nextflow.Session - [6b/5b811a] Submitted process > Baysor:runBaysor (1) | |
| Nov-17 09:47:50.387 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:47:50.387 [Task submitter] INFO nextflow.Session - [2d/681ef4] Submitted process > Baysor:runBaysor (3) | |
| Nov-17 09:47:50.398 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 09:47:50.398 [Task submitter] INFO nextflow.Session - [05/a08fcc] Submitted process > Baysor:runBaysor (2) | |
| Nov-17 09:49:33.075 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 09:52:50.480 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 09:54:33.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 09:57:50.558 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 09:59:33.171 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:02:50.624 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:04:33.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:07:50.687 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:09:33.225 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:12:50.746 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:14:33.319 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:17:50.797 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:19:33.400 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:22:50.851 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:24:33.423 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:27:50.907 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:29:33.515 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:32:50.963 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:34:33.602 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:37:51.018 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:39:33.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:42:51.072 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:44:33.624 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:47:51.123 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:49:33.703 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:52:51.172 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:54:33.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 10:57:51.221 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 10:59:33.884 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:02:51.271 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:04:33.956 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:07:51.322 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:09:34.046 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:12:51.396 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:14:34.135 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:17:51.462 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:19:34.214 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:22:51.512 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:24:34.299 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:27:51.557 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:29:34.373 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:32:51.598 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:34:34.460 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:37:51.638 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:39:34.548 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:42:51.674 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:44:34.648 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:47:51.710 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:49:34.729 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:52:51.746 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:54:34.808 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 11:57:51.778 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 11:59:34.886 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 9; name: Baysor:runBaysor (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 12:02:51.808 [Task submitter] DEBUG n.processor.TaskPollingMonitor - %% executor local > tasks in the submission queue: 1 -- tasks to be submitted are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: NEW; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:04:22.710 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 9; name: Baysor:runBaysor (1); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/6b/5b811adce7e1ed18ca0d10c6595f70] | |
| Nov-17 12:04:22.725 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 12:04:22.726 [Task submitter] INFO nextflow.Session - [70/10fead] Submitted process > Baysor:runBaysor (4) | |
| Nov-17 12:04:34.918 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:09:35.010 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:14:35.106 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:19:35.197 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:24:35.292 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:29:35.381 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:34:35.477 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:39:35.562 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:44:35.644 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:49:35.647 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:54:35.737 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 12:59:35.824 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:04:35.917 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:09:35.991 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:14:36.072 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:19:36.158 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:24:36.227 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:29:36.305 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:34:36.392 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:39:36.464 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:44:36.538 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:49:36.618 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:54:36.696 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 13:59:36.772 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:04:36.845 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:09:36.906 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:14:36.959 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:19:37.019 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:24:37.080 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:29:37.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:34:37.223 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:39:37.312 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:44:37.364 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:49:37.448 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:54:37.546 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 14:59:37.630 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:04:37.711 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 11; name: Baysor:runBaysor (3); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:07:47.033 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 11; name: Baysor:runBaysor (3); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/2d/681ef4e20f5a21affdf237a1bdbe1b] | |
| Nov-17 15:09:37.788 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:14:37.830 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 2 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 10; name: Baysor:runBaysor (2); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:19:04.080 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 10; name: Baysor:runBaysor (2); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/05/a08fcc195ee5fabf49990d6fc497c7] | |
| Nov-17 15:19:37.895 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:24:37.939 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:29:37.982 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:34:38.021 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:39:38.064 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:44:38.105 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:49:38.151 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:54:38.193 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 15:59:38.246 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:04:38.302 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:09:38.342 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:14:38.387 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:19:38.431 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:24:38.485 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:29:38.529 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:34:38.574 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:39:38.622 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:44:38.665 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:49:38.706 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:54:38.747 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 16:59:38.789 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:04:38.837 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:09:38.882 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:14:38.928 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:19:38.969 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:24:39.009 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:29:39.052 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:34:39.097 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:39:39.143 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:44:39.194 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:49:39.240 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:54:39.289 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 17:59:39.332 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:04:39.397 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:09:39.455 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:14:39.494 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:19:39.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:24:39.581 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:29:39.625 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:34:39.669 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:39:39.718 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:44:39.768 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:49:39.825 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:54:39.873 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 18:59:39.915 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:04:39.958 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:09:40.026 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:14:40.089 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:19:40.148 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:24:40.202 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:29:40.245 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:34:40.280 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:39:40.335 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:44:40.404 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:49:40.474 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:54:40.535 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 19:59:40.611 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 20:04:40.689 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 20:09:40.766 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 12; name: Baysor:runBaysor (4); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 20:14:08.537 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 12; name: Baysor:runBaysor (4); status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/70/10feadaed82498f9d91c1311d73528] | |
| Nov-17 20:14:08.558 [Actor Thread 57] WARN nextflow.container.SingularityCache - Singularity cache directory has not been defined -- Remote image will be stored in the path: /n/fs/ragr-data/users/hirak/work/singularity -- Use the environment variable NXF_SINGULARITY_CACHEDIR to specify a different location | |
| Nov-17 20:14:08.558 [Actor Thread 57] INFO nextflow.container.SingularityCache - Pulling Singularity image docker://maximilianheeg/merge-baysor:v0.1.1 [cache /n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-merge-baysor-v0.1.1.img] | |
| Nov-17 20:14:22.027 [Actor Thread 57] DEBUG nextflow.container.SingularityCache - Singularity pull complete image=docker://maximilianheeg/merge-baysor:v0.1.1 path=/n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-merge-baysor-v0.1.1.img | |
| Nov-17 20:14:22.062 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:14:22.068 [Task submitter] INFO nextflow.Session - [a6/2f5a0d] Submitted process > Baysor:mergeTiles | |
| Nov-17 20:14:40.865 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 13; name: Baysor:mergeTiles; status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/a6/2f5a0d8aff2cdd6195669bbbcfd1cc] | |
| Nov-17 20:19:40.939 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 1 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 13; name: Baysor:mergeTiles; status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/a6/2f5a0d8aff2cdd6195669bbbcfd1cc] | |
| Nov-17 20:24:08.935 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 13; name: Baysor:mergeTiles; status: COMPLETED; exit: 0; error: -; workDir: /n/fs/ragr-data/users/hirak/work/a6/2f5a0d8aff2cdd6195669bbbcfd1cc] | |
| Nov-17 20:24:09.590 [TaskFinalizer-3] DEBUG nextflow.util.ThreadPoolBuilder - Creating thread pool 'PublishDir' minSize=10; maxSize=168; workQueue=LinkedBlockingQueue[10000]; allowCoreThreadTimeout=false | |
| Nov-17 20:24:09.864 [Actor Thread 49] DEBUG nextflow.util.HashBuilder - Hash asset file sha-256: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/scripts/diagnostics.ipynb | |
| Nov-17 20:24:10.072 [Actor Thread 51] DEBUG nextflow.util.HashBuilder - Hash asset file sha-256: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/scripts/boundaries.ipynb | |
| Nov-17 20:24:10.075 [Actor Thread 23] DEBUG nextflow.util.HashBuilder - Hash asset file sha-256: /n/fs/ragr-data/users/hirak/.nextflow/assets/maximilian-heeg/xenium-segmentation/scripts/scanpy.ipynb | |
| Nov-17 20:24:10.133 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:24:10.134 [Task submitter] INFO nextflow.Session - [0c/b63e51] Submitted process > Report:diagnostics (1) | |
| Nov-17 20:24:10.163 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:24:10.164 [Task submitter] INFO nextflow.Session - [8f/85f24d] Submitted process > Report:boundaries (1) | |
| Nov-17 20:24:10.187 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:24:10.187 [Task submitter] INFO nextflow.Session - [42/f14a78] Submitted process > Report:scanpy (1) | |
| Nov-17 20:24:22.432 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 16; name: Report:scanpy (1); status: COMPLETED; exit: 1; error: -; workDir: /n/fs/ragr-data/users/hirak/work/42/f14a78e26b0bf02d0666d8b9545b56] | |
| Nov-17 20:24:22.483 [TaskFinalizer-4] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for | |
| task: name=Report:scanpy (1); work-dir=/n/fs/ragr-data/users/hirak/work/42/f14a78e26b0bf02d0666d8b9545b56 | |
| error [nextflow.exception.ProcessFailedException]: Process `Report:scanpy (1)` terminated with an error exit status (1) | |
| Nov-17 20:24:22.560 [TaskFinalizer-4] INFO nextflow.processor.TaskProcessor - [42/f14a78] NOTE: Process `Report:scanpy (1)` terminated with an error exit status (1) -- Execution is retried (1) | |
| Nov-17 20:24:22.863 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:24:22.869 [Task submitter] INFO nextflow.Session - [b5/d10f02] Re-submitted process > Report:scanpy (1) | |
| Nov-17 20:24:35.376 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 17; name: Report:scanpy (1); status: COMPLETED; exit: 1; error: -; workDir: /n/fs/ragr-data/users/hirak/work/b5/d10f023cd9542f49b65131c241d6c5] | |
| Nov-17 20:24:35.378 [TaskFinalizer-5] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for | |
| task: name=Report:scanpy (1); work-dir=/n/fs/ragr-data/users/hirak/work/b5/d10f023cd9542f49b65131c241d6c5 | |
| error [nextflow.exception.ProcessFailedException]: Process `Report:scanpy (1)` terminated with an error exit status (1) | |
| Nov-17 20:24:35.379 [TaskFinalizer-5] INFO nextflow.processor.TaskProcessor - [b5/d10f02] NOTE: Process `Report:scanpy (1)` terminated with an error exit status (1) -- Execution is retried (2) | |
| Nov-17 20:24:35.390 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:24:35.390 [Task submitter] INFO nextflow.Session - [ca/0fb54c] Re-submitted process > Report:scanpy (1) | |
| Nov-17 20:24:40.990 [Task monitor] DEBUG n.processor.TaskPollingMonitor - !! executor local > tasks to be completed: 3 -- submitted tasks are shown below | |
| ~> TaskHandler[id: 15; name: Report:diagnostics (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/0c/b63e5155bd9f40d8af4582ddbb0d74] | |
| ~> TaskHandler[id: 14; name: Report:boundaries (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/8f/85f24d7d3b0f34ad9d4ffa3b70fe17] | |
| ~> TaskHandler[id: 18; name: Report:scanpy (1); status: RUNNING; exit: -; error: -; workDir: /n/fs/ragr-data/users/hirak/work/ca/0fb54ca6e23bd87c8cb4ca671b5bd1] | |
| Nov-17 20:24:49.281 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 18; name: Report:scanpy (1); status: COMPLETED; exit: 1; error: -; workDir: /n/fs/ragr-data/users/hirak/work/ca/0fb54ca6e23bd87c8cb4ca671b5bd1] | |
| Nov-17 20:24:49.283 [TaskFinalizer-6] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for | |
| task: name=Report:scanpy (1); work-dir=/n/fs/ragr-data/users/hirak/work/ca/0fb54ca6e23bd87c8cb4ca671b5bd1 | |
| error [nextflow.exception.ProcessFailedException]: Process `Report:scanpy (1)` terminated with an error exit status (1) | |
| Nov-17 20:24:49.284 [TaskFinalizer-6] INFO nextflow.processor.TaskProcessor - [ca/0fb54c] NOTE: Process `Report:scanpy (1)` terminated with an error exit status (1) -- Execution is retried (3) | |
| Nov-17 20:24:49.295 [Task submitter] DEBUG n.executor.local.LocalTaskHandler - Launch cmd line: /bin/bash -ue .command.run | |
| Nov-17 20:24:49.296 [Task submitter] INFO nextflow.Session - [4b/330d6d] Re-submitted process > Report:scanpy (1) | |
| Nov-17 20:25:03.268 [Task monitor] DEBUG n.processor.TaskPollingMonitor - Task completed > TaskHandler[id: 19; name: Report:scanpy (1); status: COMPLETED; exit: 1; error: -; workDir: /n/fs/ragr-data/users/hirak/work/4b/330d6d42199007496aa4d80e3353e2] | |
| Nov-17 20:25:03.271 [TaskFinalizer-7] DEBUG nextflow.processor.TaskProcessor - Handling unexpected condition for | |
| task: name=Report:scanpy (1); work-dir=/n/fs/ragr-data/users/hirak/work/4b/330d6d42199007496aa4d80e3353e2 | |
| error [nextflow.exception.ProcessFailedException]: Process `Report:scanpy (1)` terminated with an error exit status (1) | |
| Nov-17 20:25:03.285 [TaskFinalizer-7] ERROR nextflow.processor.TaskProcessor - Error executing process > 'Report:scanpy (1)' | |
| Caused by: | |
| Process `Report:scanpy (1)` terminated with an error exit status (1) | |
| Command executed: | |
| export WIDTH=1800 | |
| export HEIGHT=1600 | |
| export X_OFFSET=-1 | |
| export Y_OFFSET=-1 | |
| jupyter nbconvert --to notebook --execute notebook.ipynb | |
| Command exit status: | |
| 1 | |
| Command output: | |
| (empty) | |
| Command error: | |
| [1;32m 104[0m [38;5;124;03m with the same information stored in fields: `gene_subset`, `means`, `dispersions`, `dispersion_norm`.[39;00m | |
| [1;32m 105[0m [38;5;124;03m """[39;00m | |
| File [0;32m/usr/local/lib/python3.10/site-packages/scanpy/preprocessing/_utils.py:46[0m | |
| [1;32m 41[0m [38;5;28;01melse[39;00m: | |
| [1;32m 42[0m [38;5;28;01mreturn[39;00m sparse_mean_var_minor_axis(mtx[38;5;241m.[39mdata, mtx[38;5;241m.[39mindices, [38;5;241m*[39mshape, np[38;5;241m.[39mfloat64) | |
| [1;32m 45[0m [38;5;129;43m@numba[39;49m[38;5;241;43m.[39;49m[43mnjit[49m[43m([49m[43mcache[49m[38;5;241;43m=[39;49m[38;5;28;43;01mTrue[39;49;00m[43m)[49m | |
| [0;32m---> 46[0m [38;5;28;43;01mdef[39;49;00m[43m [49m[38;5;21;43msparse_mean_var_minor_axis[39;49m[43m([49m[43mdata[49m[43m,[49m[43m [49m[43mindices[49m[43m,[49m[43m [49m[43mmajor_len[49m[43m,[49m[43m [49m[43mminor_len[49m[43m,[49m[43m [49m[43mdtype[49m[43m)[49m[43m:[49m | |
| [1;32m 47[0m [38;5;250;43m [39;49m[38;5;124;43;03m"""[39;49;00m | |
| [1;32m 48[0m [38;5;124;43;03m Computes mean and variance for a sparse matrix for the minor axis.[39;49;00m | |
| [1;32m 49[0m | |
| [1;32m 50[0m [38;5;124;43;03m Given arrays for a csr matrix, returns the means and variances for each[39;49;00m | |
| [1;32m 51[0m [38;5;124;43;03m column back.[39;49;00m | |
| [1;32m 52[0m [38;5;124;43;03m """[39;49;00m | |
| [1;32m 53[0m [43m [49m[43mnon_zero[49m[43m [49m[38;5;241;43m=[39;49m[43m [49m[43mindices[49m[38;5;241;43m.[39;49m[43mshape[49m[43m[[49m[38;5;241;43m0[39;49m[43m][49m | |
| File [0;32m/usr/local/lib/python3.10/site-packages/numba/core/decorators.py:234[0m, in [0;36m_jit.<locals>.wrapper[0;34m(func)[0m | |
| [1;32m 230[0m disp [38;5;241m=[39m dispatcher(py_func[38;5;241m=[39mfunc, [38;5;28mlocals[39m[38;5;241m=[39m[38;5;28mlocals[39m, | |
| [1;32m 231[0m targetoptions[38;5;241m=[39mtargetoptions, | |
| [1;32m 232[0m [38;5;241m*[39m[38;5;241m*[39mdispatcher_args) | |
| [1;32m 233[0m [38;5;28;01mif[39;00m cache: | |
| [0;32m--> 234[0m [43mdisp[49m[38;5;241;43m.[39;49m[43menable_caching[49m[43m([49m[43m)[49m | |
| [1;32m 235[0m [38;5;28;01mif[39;00m sigs [38;5;129;01mis[39;00m [38;5;129;01mnot[39;00m [38;5;28;01mNone[39;00m: | |
| [1;32m 236[0m [38;5;66;03m# Register the Dispatcher to the type inference mechanism,[39;00m | |
| [1;32m 237[0m [38;5;66;03m# even though the decorator hasn't returned yet.[39;00m | |
| [1;32m 238[0m [38;5;28;01mfrom[39;00m [38;5;21;01mnumba[39;00m[38;5;21;01m.[39;00m[38;5;21;01mcore[39;00m [38;5;28;01mimport[39;00m typeinfer | |
| File [0;32m/usr/local/lib/python3.10/site-packages/numba/core/dispatcher.py:863[0m, in [0;36mDispatcher.enable_caching[0;34m(self)[0m | |
| [1;32m 862[0m [38;5;28;01mdef[39;00m [38;5;21menable_caching[39m([38;5;28mself[39m): | |
| [0;32m--> 863[0m [38;5;28mself[39m[38;5;241m.[39m_cache [38;5;241m=[39m [43mFunctionCache[49m[43m([49m[38;5;28;43mself[39;49m[38;5;241;43m.[39;49m[43mpy_func[49m[43m)[49m | |
| File [0;32m/usr/local/lib/python3.10/site-packages/numba/core/caching.py:601[0m, in [0;36mCache.__init__[0;34m(self, py_func)[0m | |
| [1;32m 599[0m [38;5;28mself[39m[38;5;241m.[39m_name [38;5;241m=[39m [38;5;28mrepr[39m(py_func) | |
| [1;32m 600[0m [38;5;28mself[39m[38;5;241m.[39m_py_func [38;5;241m=[39m py_func | |
| [0;32m--> 601[0m [38;5;28mself[39m[38;5;241m.[39m_impl [38;5;241m=[39m [38;5;28;43mself[39;49m[38;5;241;43m.[39;49m[43m_impl_class[49m[43m([49m[43mpy_func[49m[43m)[49m | |
| [1;32m 602[0m [38;5;28mself[39m[38;5;241m.[39m_cache_path [38;5;241m=[39m [38;5;28mself[39m[38;5;241m.[39m_impl[38;5;241m.[39mlocator[38;5;241m.[39mget_cache_path() | |
| [1;32m 603[0m [38;5;66;03m# This may be a bit strict but avoids us maintaining a magic number[39;00m | |
| File [0;32m/usr/local/lib/python3.10/site-packages/numba/core/caching.py:337[0m, in [0;36mCacheImpl.__init__[0;34m(self, py_func)[0m | |
| [1;32m 335[0m [38;5;28;01mbreak[39;00m | |
| [1;32m 336[0m [38;5;28;01melse[39;00m: | |
| [0;32m--> 337[0m [38;5;28;01mraise[39;00m [38;5;167;01mRuntimeError[39;00m([38;5;124m"[39m[38;5;124mcannot cache function [39m[38;5;132;01m%r[39;00m[38;5;124m: no locator available [39m[38;5;124m"[39m | |
| [1;32m 338[0m [38;5;124m"[39m[38;5;124mfor file [39m[38;5;132;01m%r[39;00m[38;5;124m"[39m [38;5;241m%[39m (qualname, source_path)) | |
| [1;32m 339[0m [38;5;28mself[39m[38;5;241m.[39m_locator [38;5;241m=[39m locator | |
| [1;32m 340[0m [38;5;66;03m# Use filename base name as module name to avoid conflict between[39;00m | |
| [1;32m 341[0m [38;5;66;03m# foo/__init__.py and foo/foo.py[39;00m | |
| [0;31mRuntimeError[0m: cannot cache function 'sparse_mean_var_minor_axis': no locator available for file '/usr/local/lib/python3.10/site-packages/scanpy/preprocessing/_utils.py' | |
| INFO: Cleaning up image... | |
| Work dir: | |
| /n/fs/ragr-data/users/hirak/work/4b/330d6d42199007496aa4d80e3353e2 | |
| Container: | |
| /n/fs/ragr-data/users/hirak/work/singularity/maximilianheeg-docker-scanpy-v1.9.5_pyarrow.img | |
| Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` | |
| Nov-17 20:25:03.289 [TaskFinalizer-7] DEBUG nextflow.Session - Session aborted -- Cause: Process `Report:scanpy (1)` terminated with an error exit status (1) | |
| Nov-17 20:25:03.312 [TaskFinalizer-7] DEBUG nextflow.Session - | |
| Thread[Actor Thread 24,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-18,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 16,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 35,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 44,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[JGit-FileStoreAttributeReader-1,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 26,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Task monitor,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:234) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2211) | |
| app//nextflow.processor.TaskPollingMonitor$_await_closure5.doCall(TaskPollingMonitor.groovy:529) | |
| app//nextflow.processor.TaskPollingMonitor$_await_closure5.call(TaskPollingMonitor.groovy) | |
| app//nextflow.extension.Bolts.withLock(Bolts.groovy:337) | |
| app//nextflow.extension.Bolts.withLock(Bolts.groovy) | |
| app//nextflow.processor.TaskPollingMonitor.await(TaskPollingMonitor.groovy:528) | |
| app//nextflow.processor.TaskPollingMonitor.pollLoop(TaskPollingMonitor.groovy:453) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82) | |
| app//nextflow.processor.TaskPollingMonitor$_start_closure2.doCall(TaskPollingMonitor.groovy:318) | |
| app//nextflow.processor.TaskPollingMonitor$_start_closure2.call(TaskPollingMonitor.groovy) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-7,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-16,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 48,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 22,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 4,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Thread-4,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:234) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.awaitNanos(AbstractQueuedSynchronizer.java:2123) | |
| [email protected]/java.util.concurrent.LinkedBlockingDeque.pollFirst(LinkedBlockingDeque.java:513) | |
| [email protected]/java.util.concurrent.LinkedBlockingDeque.poll(LinkedBlockingDeque.java:675) | |
| app//nextflow.util.SimpleAgent.run(SimpleAgent.groovy:89) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//groovy.lang.Closure.call(Closure.java:433) | |
| app//groovy.lang.Closure.call(Closure.java:412) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[JGit-WorkQueue,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:1170) | |
| [email protected]/java.util.concurrent.ScheduledThreadPoolExecutor$DelayedWorkQueue.take(ScheduledThreadPoolExecutor.java:899) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-5,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 6,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[process reaper (pid 2164828),10,system] | |
| [email protected]/java.lang.ProcessHandleImpl.waitForProcessExit0(Native Method) | |
| [email protected]/java.lang.ProcessHandleImpl$1.run(ProcessHandleImpl.java:145) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 49,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-6,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-4,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 27,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-4,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-9,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Common-Cleaner,8,InnocuousThreadGroup] | |
| [email protected]/java.lang.Object.wait(Native Method) | |
| [email protected]/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155) | |
| [email protected]/jdk.internal.ref.CleanerImpl.run(CleanerImpl.java:148) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| [email protected]/jdk.internal.misc.InnocuousThread.run(InnocuousThread.java:161) | |
| Thread[Actor Thread 3,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 31,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 13,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-3,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-8,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-1,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-2,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 55,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Task submitter,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| app//nextflow.processor.TaskPollingMonitor.awaitTasks(TaskPollingMonitor.groovy:388) | |
| app//nextflow.processor.TaskPollingMonitor.submitLoop(TaskPollingMonitor.groovy:412) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//groovy.lang.Closure.call(Closure.java:433) | |
| app//groovy.lang.Closure.call(Closure.java:412) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 43,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 51,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Signal Dispatcher,9,system] | |
| Thread[TaskFinalizer-5,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[AnsiLogObserver,5,main] | |
| [email protected]/java.lang.ProcessImpl.forkAndExec(Native Method) | |
| [email protected]/java.lang.ProcessImpl.<init>(ProcessImpl.java:340) | |
| [email protected]/java.lang.ProcessImpl.start(ProcessImpl.java:271) | |
| [email protected]/java.lang.ProcessBuilder.start(ProcessBuilder.java:1107) | |
| [email protected]/java.lang.ProcessBuilder.start(ProcessBuilder.java:1071) | |
| [email protected]/java.lang.Runtime.exec(Runtime.java:592) | |
| [email protected]/java.lang.Runtime.exec(Runtime.java:451) | |
| app//jline.internal.TerminalLineSettings.exec(TerminalLineSettings.java:183) | |
| app//jline.internal.TerminalLineSettings.exec(TerminalLineSettings.java:173) | |
| app//jline.internal.TerminalLineSettings.stty(TerminalLineSettings.java:168) | |
| app//jline.internal.TerminalLineSettings.get(TerminalLineSettings.java:72) | |
| app//jline.internal.TerminalLineSettings.getProperty(TerminalLineSettings.java:92) | |
| app//jline.UnixTerminal.getWidth(UnixTerminal.java:77) | |
| app//nextflow.trace.AnsiLogObserver.renderProcesses(AnsiLogObserver.groovy:257) | |
| app//nextflow.trace.AnsiLogObserver.renderProgress(AnsiLogObserver.groovy:312) | |
| app//nextflow.trace.AnsiLogObserver.render0(AnsiLogObserver.groovy:183) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethodClosure(MetaClassImpl.java:1017) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1207) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//groovy.lang.Closure.call(Closure.java:433) | |
| app//groovy.lang.Closure.call(Closure.java:412) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-12,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 8,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-3,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 17,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 41,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-13,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 20,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-2,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 38,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-17,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-21,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[process reaper,10,system] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:234) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:462) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:937) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1053) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[process reaper,10,system] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.parkNanos(LockSupport.java:234) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:462) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.poll(SynchronousQueue.java:937) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1053) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 29,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 5,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-8,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 33,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-15,5,main] | |
| [email protected]/java.lang.Object.wait(Native Method) | |
| [email protected]/java.lang.Object.wait(Object.java:328) | |
| [email protected]/java.lang.ProcessImpl.waitFor(ProcessImpl.java:495) | |
| app//nextflow.executor.local.LocalTaskHandler$_submit_closure1.doCall(LocalTaskHandler.groovy:109) | |
| app//nextflow.executor.local.LocalTaskHandler$_submit_closure1.call(LocalTaskHandler.groovy) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) | |
| [email protected]/java.util.concurrent.FutureTask.run(FutureTask.java:264) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-22,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-7,5,main] | |
| [email protected]/java.lang.Thread.dumpThreads(Native Method) | |
| [email protected]/java.lang.Thread.getAllStackTraces(Thread.java:1653) | |
| app//nextflow.util.SysHelper.dumpThreads(SysHelper.groovy:188) | |
| app//nextflow.Session.abort(Session.groovy:800) | |
| app//nextflow.Session.fault(Session.groovy:766) | |
| app//nextflow.processor.TaskPollingMonitor.finalizeTask(TaskPollingMonitor.groovy:695) | |
| app//nextflow.processor.TaskPollingMonitor.safeFinalizeTask(TaskPollingMonitor.groovy:678) | |
| jdk.internal.reflect.GeneratedMethodAccessor120.invoke(Unknown Source) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82) | |
| app//nextflow.processor.TaskPollingMonitor$_checkTaskStatus_lambda8.doCall(TaskPollingMonitor.groovy:668) | |
| app//nextflow.processor.TaskPollingMonitor$$Lambda$494/0x0000000840613840.run(Unknown Source) | |
| [email protected]/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) | |
| [email protected]/java.util.concurrent.FutureTask.run(FutureTask.java:264) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 32,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-11,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 1,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-19,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 47,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 39,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[process reaper (pid 2164846),10,system] | |
| [email protected]/java.lang.ProcessHandleImpl.waitForProcessExit0(Native Method) | |
| [email protected]/java.lang.ProcessHandleImpl$1.run(ProcessHandleImpl.java:145) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 14,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 45,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 54,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 9,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 34,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 18,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 53,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-10,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 15,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 25,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-9,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[main,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| app//nextflow.util.Barrier$_awaitCompletion_closure3.doCall(Barrier.groovy:92) | |
| app//nextflow.util.Barrier$_awaitCompletion_closure3.call(Barrier.groovy) | |
| app//nextflow.extension.Bolts.withLock(Bolts.groovy:337) | |
| app//nextflow.extension.Bolts.withLock(Bolts.groovy) | |
| app//nextflow.util.Barrier.awaitCompletion(Barrier.groovy:89) | |
| app//nextflow.Session.await(Session.groovy:676) | |
| app//nextflow.script.ScriptRunner.await(ScriptRunner.groovy:256) | |
| app//nextflow.script.ScriptRunner.execute(ScriptRunner.groovy:144) | |
| app//nextflow.cli.CmdRun.run(CmdRun.groovy:376) | |
| app//nextflow.cli.Launcher.run(Launcher.groovy:503) | |
| app//nextflow.cli.Launcher.main(Launcher.groovy:658) | |
| Thread[Actor Thread 12,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 28,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 2,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 10,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-1,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 50,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-6,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 23,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 46,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 30,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 52,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 7,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Reference Handler,10,system] | |
| [email protected]/java.lang.ref.Reference.waitForReferencePendingList(Native Method) | |
| [email protected]/java.lang.ref.Reference.processPendingReferences(Reference.java:241) | |
| [email protected]/java.lang.ref.Reference$ReferenceHandler.run(Reference.java:213) | |
| Thread[pool-4-thread-14,5,main] | |
| [email protected]/java.lang.Object.wait(Native Method) | |
| [email protected]/java.lang.Object.wait(Object.java:328) | |
| [email protected]/java.lang.ProcessImpl.waitFor(ProcessImpl.java:495) | |
| app//nextflow.executor.local.LocalTaskHandler$_submit_closure1.doCall(LocalTaskHandler.groovy:109) | |
| app//nextflow.executor.local.LocalTaskHandler$_submit_closure1.call(LocalTaskHandler.groovy) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) | |
| [email protected]/java.util.concurrent.FutureTask.run(FutureTask.java:264) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 42,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 37,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 36,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 21,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Finalizer,8,system] | |
| [email protected]/java.lang.Object.wait(Native Method) | |
| [email protected]/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:155) | |
| [email protected]/java.lang.ref.ReferenceQueue.remove(ReferenceQueue.java:176) | |
| [email protected]/java.lang.ref.Finalizer$FinalizerThread.run(Finalizer.java:170) | |
| Thread[Actor Thread 40,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[TaskFinalizer-10,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[PublishDir-1,5,main] | |
| [email protected]/sun.nio.fs.UnixCopyFile.transfer(Native Method) | |
| [email protected]/sun.nio.fs.UnixCopyFile.copyFile(UnixCopyFile.java:256) | |
| [email protected]/sun.nio.fs.UnixCopyFile.copy(UnixCopyFile.java:603) | |
| [email protected]/sun.nio.fs.UnixFileSystemProvider.copy(UnixFileSystemProvider.java:258) | |
| app//nextflow.file.FileHelper.copyPath(FileHelper.groovy:990) | |
| app//nextflow.processor.PublishDir.processFileImpl(PublishDir.groovy:515) | |
| app//nextflow.processor.PublishDir.processFile(PublishDir.groovy:414) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82) | |
| app//nextflow.processor.PublishDir$_retryableProcessFile_closure2.doCall(PublishDir.groovy:405) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//org.codehaus.groovy.runtime.metaclass.ClosureMetaClass.invokeMethod(ClosureMetaClass.java:279) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//groovy.lang.Closure.call(Closure.java:433) | |
| app//org.codehaus.groovy.runtime.ConvertedClosure.invokeCustom(ConvertedClosure.java:52) | |
| app//org.codehaus.groovy.runtime.ConversionHandler.invoke(ConversionHandler.java:113) | |
| app//com.sun.proxy.$Proxy32.get(Unknown Source) | |
| app//dev.failsafe.Functions.lambda$get$0(Functions.java:46) | |
| app//dev.failsafe.Functions$$Lambda$499/0x000000084067e840.apply(Unknown Source) | |
| app//dev.failsafe.internal.RetryPolicyExecutor.lambda$apply$0(RetryPolicyExecutor.java:75) | |
| app//dev.failsafe.internal.RetryPolicyExecutor$$Lambda$501/0x000000084067d840.apply(Unknown Source) | |
| app//dev.failsafe.SyncExecutionImpl.executeSync(SyncExecutionImpl.java:176) | |
| app//dev.failsafe.FailsafeExecutor.call(FailsafeExecutor.java:437) | |
| app//dev.failsafe.FailsafeExecutor.get(FailsafeExecutor.java:129) | |
| app//nextflow.processor.PublishDir.retryableProcessFile(PublishDir.groovy:404) | |
| app//nextflow.processor.PublishDir.safeProcessFile(PublishDir.groovy:375) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) | |
| [email protected]/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) | |
| [email protected]/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) | |
| [email protected]/java.lang.reflect.Method.invoke(Method.java:566) | |
| app//org.codehaus.groovy.reflection.CachedMethod.invoke(CachedMethod.java:343) | |
| app//groovy.lang.MetaMethod.doMethodInvoke(MetaMethod.java:328) | |
| app//groovy.lang.MetaClassImpl.doInvokeMethod(MetaClassImpl.java:1333) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1088) | |
| app//groovy.lang.MetaClassImpl.invokeMethod(MetaClassImpl.java:1007) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokePogoMethod(InvokerHelper.java:645) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethod(InvokerHelper.java:628) | |
| app//org.codehaus.groovy.runtime.InvokerHelper.invokeMethodSafe(InvokerHelper.java:82) | |
| app//nextflow.processor.PublishDir$_apply1_closure1.doCall(PublishDir.groovy:350) | |
| app//nextflow.processor.PublishDir$_apply1_closure1.call(PublishDir.groovy) | |
| app//groovy.lang.Closure.run(Closure.java:505) | |
| [email protected]/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) | |
| [email protected]/java.util.concurrent.FutureTask.run(FutureTask.java:264) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 56,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 57,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 11,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[Actor Thread 19,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.awaitFulfill(SynchronousQueue.java:460) | |
| [email protected]/java.util.concurrent.SynchronousQueue$TransferStack.transfer(SynchronousQueue.java:361) | |
| [email protected]/java.util.concurrent.SynchronousQueue.take(SynchronousQueue.java:920) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Thread[pool-4-thread-20,5,main] | |
| [email protected]/jdk.internal.misc.Unsafe.park(Native Method) | |
| [email protected]/java.util.concurrent.locks.LockSupport.park(LockSupport.java:194) | |
| [email protected]/java.util.concurrent.locks.AbstractQueuedSynchronizer$ConditionObject.await(AbstractQueuedSynchronizer.java:2081) | |
| [email protected]/java.util.concurrent.LinkedBlockingQueue.take(LinkedBlockingQueue.java:433) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.getTask(ThreadPoolExecutor.java:1054) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1114) | |
| [email protected]/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) | |
| [email protected]/java.lang.Thread.run(Thread.java:829) | |
| Nov-17 20:25:03.315 [main] DEBUG nextflow.Session - Session await > all processes finished | |
| Nov-17 20:25:03.315 [main] DEBUG nextflow.Session - Session await > all barriers passed | |
| Nov-17 20:25:03.317 [Task monitor] DEBUG n.processor.TaskPollingMonitor - <<< barrier arrives (monitor: local) - terminating tasks monitor poll loop | |
| Nov-17 20:25:03.322 [main] WARN n.processor.TaskPollingMonitor - Killing running tasks (2) | |
| Nov-17 20:25:04.674 [main] DEBUG n.trace.WorkflowStatsObserver - Workflow completed > WorkflowStats[succeededCount=13; failedCount=4; ignoredCount=0; cachedCount=0; pendingCount=0; submittedCount=0; runningCount=0; retriesCount=3; abortedCount=2; succeedDuration=7d 3h 50m 13s; failedDuration=6m 33s; cachedDuration=0ms;loadCpus=0; loadMemory=0; peakRunning=4; peakCpus=24; peakMemory=984 GB; ] | |
| Nov-17 20:25:04.675 [main] DEBUG nextflow.trace.TraceFileObserver - Workflow completed -- saving trace file | |
| Nov-17 20:25:04.681 [main] DEBUG nextflow.trace.ReportObserver - Workflow completed -- rendering execution report | |
| Nov-17 20:25:06.132 [main] DEBUG nextflow.trace.TimelineObserver - Workflow completed -- rendering execution timeline | |
| Nov-17 20:25:06.383 [main] DEBUG nextflow.cache.CacheDB - Closing CacheDB done | |
| Nov-17 20:25:06.503 [main] DEBUG nextflow.script.ScriptRunner - > Execution complete -- Goodbye |
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