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April 2, 2015 15:54
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cyclus vs cymetric build
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| scopatz@athenaie ~/cyclus develop $ ./install.py --build_type=Debug -j3 | |
| /home/scopatz/miniconda3/bin/cmake | |
| -- The C compiler identification is GNU 4.9.1 | |
| -- The CXX compiler identification is GNU 4.9.1 | |
| -- Check for working C compiler: /usr/bin/cc | |
| -- Check for working C compiler: /usr/bin/cc -- works | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/c++ | |
| -- Check for working CXX compiler: /usr/bin/c++ -- works | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| Debug | |
| -- Not Found Tcmalloc: Tcmalloc_LIBRARY-NOTFOUND | |
| -- Found LibXml2: /home/scopatz/miniconda3/lib/libxml2.so (found version "2.9.0") | |
| -- checking for module 'glib-2.0' | |
| -- package 'glib-2.0' not found | |
| -- Found glib-2.0: /home/scopatz/miniconda3/include/glib-2.0, /home/scopatz/miniconda3/lib/libglib-2.0.so | |
| -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") | |
| -- checking for module 'sigc++-2.0' | |
| -- package 'sigc++-2.0' not found | |
| -- Found SigC++ | |
| -- checking for module 'glibmm-2.4' | |
| -- package 'glibmm-2.4' not found | |
| -- Found Glibmm | |
| -- checking for module 'libxml++-2.6' | |
| -- package 'libxml++-2.6' not found | |
| -- Found LibXML++ | |
| /home/scopatz/miniconda3/lib/libxml2.so/home/scopatz/miniconda3/lib/libxml++-2.6.so/home/scopatz/miniconda3/lib/libxml2.so/home/scopatz/miniconda3/lib/libglibmm-2.4.so/home/scopatz/miniconda3/lib/libglib-2.0.so/home/scopatz/miniconda3/lib/libsigc-2.0.so | |
| -- Found Sqlite3 header file in /home/scopatz/miniconda3/include | |
| -- Found Sqlite3 libraries: optimized;/home/scopatz/miniconda3/lib/libsqlite3.so;debug;/home/scopatz/miniconda3/lib/libsqlite3.so | |
| -- Found HDF5: debug;/home/scopatz/miniconda3/lib/libhdf5_hl.so;/home/scopatz/miniconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/scopatz/miniconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/home/scopatz/miniconda3/lib/libm.so;optimized;/home/scopatz/miniconda3/lib/libhdf5_hl.so;/home/scopatz/miniconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/scopatz/miniconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/home/scopatz/miniconda3/lib/libm.so | |
| -- Boost version: 1.50.0 | |
| -- Found the following Boost libraries: | |
| -- program_options | |
| -- filesystem | |
| -- system | |
| -- serialization | |
| -- Boost Root: | |
| -- Boost Include directory: /home/scopatz/miniconda3/include | |
| -- Boost Library directories: /home/scopatz/miniconda3/lib | |
| -- Boost Program Options location: /home/scopatz/miniconda3/lib/libboost_program_options.so | |
| -- Boost System location: /home/scopatz/miniconda3/lib/libboost_system.so | |
| -- Boost Filesystem location: /home/scopatz/miniconda3/lib/libboost_filesystem.so | |
| -- Boost Serialization location: /home/scopatz/miniconda3/lib/libboost_serialization.so | |
| -- Looking for sgemm_ | |
| -- Looking for sgemm_ - found | |
| -- Looking for include file pthread.h | |
| -- Looking for include file pthread.h - found | |
| -- Looking for pthread_create | |
| -- Looking for pthread_create - not found | |
| -- Looking for pthread_create in pthreads | |
| -- Looking for pthread_create in pthreads - not found | |
| -- Looking for pthread_create in pthread | |
| -- Looking for pthread_create in pthread - found | |
| -- Found Threads: TRUE | |
| -- A library with BLAS API found. | |
| -- Looking for cheev_ | |
| -- Looking for cheev_ - found | |
| -- A library with LAPACK API found. | |
| Found LAPACK Libraries: /usr/lib/liblapack.so.3gf;/usr/lib/libblas.so | |
| COIN Root Dir: | |
| -- COIN_ROOT_DIR hint is : | |
| -- Coin multiple library dependency status: | |
| COIN Include Dir: /home/scopatz/miniconda3/include/coin | |
| COIN CBC: /home/scopatz/miniconda3/lib/libCbc.so | |
| COIN CBC solver: /home/scopatz/miniconda3/lib/libCbcSolver.so | |
| COIN CGL: /home/scopatz/miniconda3/lib/libCgl.so | |
| COIN CLP: /home/scopatz/miniconda3/lib/libClp.so | |
| COIN UTILS: /home/scopatz/miniconda3/lib/libCoinUtils.so | |
| COIN OSI: /home/scopatz/miniconda3/lib/libOsi.so | |
| COIN OSI CLP: /home/scopatz/miniconda3/lib/libOsiClp.so | |
| COIN ZLIB: /usr/lib/x86_64-linux-gnu/libz.so | |
| COIN BZ2: /home/scopatz/miniconda3/lib/libbz2.a | |
| -- Found COIN: /home/scopatz/miniconda3/include/coin | |
| -- Found COIN Include Dirs: /home/scopatz/miniconda3/include/coin | |
| -- Found '/home/scopatz/cyclus/share/cyclus_nuc_data.h5' | |
| -- Starting construction of build files for agent: test_agent |
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| scopatz@athenaie ~/cymetric master $ ./setup.py install --user | |
| Generating API Bindings... | |
| Downloading http://fuelcycle.org/arche/dbtypes.js ... | |
| /home/scopatz/miniconda3/bin/cmake | |
| CMake command is | |
| cmake .. -DPYTHON_EXECUTABLE=/home/scopatz/miniconda3/bin/python | |
| -- The C compiler identification is GNU 4.9.1 | |
| -- The CXX compiler identification is GNU 4.9.1 | |
| -- Check for working C compiler: /usr/bin/cc | |
| -- Check for working C compiler: /usr/bin/cc -- works | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/c++ | |
| -- Check for working CXX compiler: /usr/bin/c++ -- works | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Cymetric platform defined as: __LINUX__ | |
| __________________________________________________________ | |
| | ____ __ __ __ __ _____ _____ ____ ___ ____ | | |
| / | |___ \ \ \ / /| \/ ||____ ||_ _| / _ ||_ _||___ \ | | |
| /---, | | | \ V / | |\/| | |_ | | | | (_| | | | | | | | |
| -----# ==| | ___| | | | | | | | ___| | | | > _ | | | ___| | | | |
| | :) # ==| | |____/ |_| |_| |_||_____| |_| /_/ |_||___||____/ | | |
| -----'----# | |_________________________________________________________| | |
| |)___() '# |______====____ \___________________________________| | |
| [_/,-,\"--"------ //,-, ,-,\\\ |/ //,-, ,-, ,-,\\ __# | |
| ( 0 )|===******||( 0 )( 0 )||- o '( 0 )( 0 )( 0 )|| | |
| ----'-'--------------'-'--'-'-----------------------'-'--'-'--'-'-------------- | |
| -- Build type: Release | |
| -- Found PythonInterp: /home/scopatz/miniconda3/bin/python (found version "3.4.3") | |
| -- Found PythonLibs: /home/scopatz/miniconda3/lib/libpython3.4m.so | |
| -- PYTHON_EXECUTABLE: /home/scopatz/miniconda3/bin/python | |
| -- Found Cython: /home/scopatz/miniconda3/bin/cython | |
| -- Cython Version: Cython version 0.21.2 | |
| -- Found LibXml2: /home/scopatz/miniconda3/lib/libxml2.so (found version "2.9.0") | |
| -- checking for module 'glib-2.0' | |
| -- package 'glib-2.0' not found | |
| -- Found glib-2.0: /home/scopatz/miniconda3/include/glib-2.0, /home/scopatz/miniconda3/lib/libglib-2.0.so | |
| -- Found PkgConfig: /usr/bin/pkg-config (found version "0.28") | |
| -- checking for module 'sigc++-2.0' | |
| -- package 'sigc++-2.0' not found | |
| -- Found SigC++ | |
| -- checking for module 'glibmm-2.4' | |
| -- package 'glibmm-2.4' not found | |
| -- Found Glibmm | |
| -- checking for module 'libxml++-2.6' | |
| -- package 'libxml++-2.6' not found | |
| -- Found LibXML++ | |
| -- Boost version: 1.50.0 | |
| -- Found the following Boost libraries: | |
| -- filesystem | |
| -- system | |
| -- Looking for sgemm_ | |
| -- Looking for sgemm_ - found | |
| -- Looking for include file pthread.h | |
| -- Looking for include file pthread.h - found | |
| -- Looking for pthread_create | |
| -- Looking for pthread_create - not found | |
| -- Looking for pthread_create in pthreads | |
| -- Looking for pthread_create in pthreads - not found | |
| -- Looking for pthread_create in pthread | |
| -- Looking for pthread_create in pthread - found | |
| -- Found Threads: TRUE | |
| -- A library with BLAS API found. | |
| -- Looking for cheev_ | |
| -- Looking for cheev_ - found | |
| -- A library with LAPACK API found. | |
| Found LAPACK Libraries: /usr/lib/liblapack.so.3gf;/usr/lib/libblas.so | |
| -- Found HDF5: debug;/home/scopatz/miniconda3/lib/libhdf5_hl.so;/home/scopatz/miniconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/scopatz/miniconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/home/scopatz/miniconda3/lib/libm.so;optimized;/home/scopatz/miniconda3/lib/libhdf5_hl.so;/home/scopatz/miniconda3/lib/libhdf5.so;/usr/lib/x86_64-linux-gnu/libpthread.so;/home/scopatz/miniconda3/lib/libz.so;/usr/lib/x86_64-linux-gnu/librt.so;/usr/lib/x86_64-linux-gnu/libdl.so;/home/scopatz/miniconda3/lib/libm.so | |
| -- NUMPY_VERSION_STRING = 1.9.2 | |
| -- Found Numpy: 1.9.2 | |
| COIN Root Dir: | |
| -- COIN_ROOT_DIR hint is : | |
| -- Coin multiple library dependency status: | |
| COIN Include Dir: /home/scopatz/miniconda3/include/coin | |
| COIN CBC: /home/scopatz/miniconda3/lib/libCbc.so | |
| COIN CBC solver: /home/scopatz/miniconda3/lib/libCbcSolver.so | |
| COIN CGL: /home/scopatz/miniconda3/lib/libCgl.so | |
| COIN CLP: /home/scopatz/miniconda3/lib/libClp.so | |
| COIN UTILS: /home/scopatz/miniconda3/lib/libCoinUtils.so | |
| COIN OSI: /home/scopatz/miniconda3/lib/libOsi.so | |
| COIN OSI CLP: /home/scopatz/miniconda3/lib/libOsiClp.so | |
| COIN ZLIB: /usr/lib/x86_64-linux-gnu/libz.so | |
| COIN BZ2: /home/scopatz/miniconda3/lib/libbz2.a | |
| -- Found COIN: /home/scopatz/miniconda3/include/coin | |
| -- Found COIN Include Dirs: /home/scopatz/miniconda3/include/coin | |
| -- Using /home/scopatz/.local as CYCLUS_ROOT_DIR. | |
| -- Found Cyclus Core Headers : /home/scopatz/.local/include/cyclus | |
| -- Found Cyclus Core Test Headers : /home/scopatz/.local/include/cyclus | |
| -- Found Cyclus Core Shared Data : /home/scopatz/.local/share/cyclus | |
| -- Found Cyclus Core Library : /home/scopatz/.local/lib/libcyclus.so | |
| -- Found Cyclus Test Libraries : /home/scopatz/.local/lib/libgtest.so/home/scopatz/.local/lib/cyclus/libbaseagentunittests.so | |
| -- CMake Install Prefix: /usr/local | |
| -- RPATH: $ORIGIN/lib | |
| -- Include paths for /home/scopatz/cymetric/cymetric: /home/scopatz/miniconda3/lib/python3.4/site-packages/numpy/core/include;/home/scopatz/miniconda3/include;/home/scopatz/miniconda3/include/libxml++-2.6;/home/scopatz/miniconda3/include/glibmm-2.4;/home/scopatz/miniconda3/lib/glibmm-2.4/include;/home/scopatz/miniconda3/include/glib-2.0;/home/scopatz/miniconda3/lib/glib-2.0/include;/home/scopatz/miniconda3/include/sigc++-2.0;/home/scopatz/miniconda3/lib/sigc++-2.0/include;/home/scopatz/miniconda3/lib/libxml++-2.6/include;/home/scopatz/miniconda3/include;/home/scopatz/miniconda3/include/coin;/home/scopatz/.local/include/cyclus | |
| -- Include paths for /home/scopatz/cymetric: /home/scopatz/miniconda3/lib/python3.4/site-packages/numpy/core/include;/home/scopatz/miniconda3/include;/home/scopatz/miniconda3/include/libxml++-2.6;/home/scopatz/miniconda3/include/glibmm-2.4;/home/scopatz/miniconda3/lib/glibmm-2.4/include;/home/scopatz/miniconda3/include/glib-2.0;/home/scopatz/miniconda3/lib/glib-2.0/include;/home/scopatz/miniconda3/include/sigc++-2.0;/home/scopatz/miniconda3/lib/sigc++-2.0/include;/home/scopatz/miniconda3/lib/libxml++-2.6/include;/home/scopatz/miniconda3/include;/home/scopatz/miniconda3/include/coin;/home/scopatz/.local/include/cyclus | |
| -- Copying C/C++ header files. | |
| -- Copying Cython header files. | |
| -- Copying scripts. | |
| -- Configuring done | |
| CMake Warning at cmake/FindPythonLibsNew.cmake:204 (ADD_LIBRARY): | |
| Cannot generate a safe runtime search path for target cyclus because files | |
| in some directories may conflict with libraries in implicit directories: | |
| runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in: | |
| /home/scopatz/miniconda3/lib | |
| Some of these libraries may not be found correctly. | |
| Call Stack (most recent call first): | |
| cmake/UseCython.cmake:245 (python_add_module) | |
| cymetric/CMakeLists.txt:21 (cython_add_module) | |
| CMake Warning at cmake/FindPythonLibsNew.cmake:204 (ADD_LIBRARY): | |
| Cannot generate a safe runtime search path for target typesystem because | |
| files in some directories may conflict with libraries in implicit | |
| directories: | |
| runtime library [libz.so.1] in /usr/lib/x86_64-linux-gnu may be hidden by files in: | |
| /home/scopatz/miniconda3/lib | |
| Some of these libraries may not be found correctly. | |
| Call Stack (most recent call first): | |
| cmake/UseCython.cmake:245 (python_add_module) | |
| cymetric/CMakeLists.txt:13 (cython_add_module) | |
| -- Generating done | |
| -- Build files have been written to: /home/scopatz/cymetric/build |
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