gistfile1.txt

$ python -m pip install -e .
Defaulting to user installation because normal site-packages is not writeable
Obtaining file:///home/sb/projects/joss/copro
Requirement already satisfied: xarray==0.15.1 in /home/sb/.local/lib/python3.8/site-packages (from copro==0.0.7b0) (0.15.1)
Requirement already satisfied: rioxarray>=0.0.26 in /usr/local/lib/python3.8/dist-packages/rioxarray-0.1.1-py3.8.egg (from copro==0.0.7b0) (0.1.1)
Requirement already satisfied: rasterstats==0.14 in /usr/local/lib/python3.8/dist-packages/rasterstats-0.14.0-py3.8.egg (from copro==0.0.7b0) (0.14.0)
Requirement already satisfied: geopandas==0.8.0 in /usr/local/lib/python3.8/dist-packages/geopandas-0.8.0-py3.8.egg (from copro==0.0.7b0) (0.8.0)
Requirement already satisfied: scikit-learn>=0.22.1 in /usr/local/lib/python3.8/dist-packages/scikit_learn-0.24.0rc1-py3.8-linux-x86_64.egg (from copro==0.0.7b0) (0.24.0rc1)
Collecting numpy==1.18.1
  Using cached numpy-1.18.1-cp38-cp38-manylinux1_x86_64.whl (20.6 MB)
Collecting pandas==1.0.3
  Using cached pandas-1.0.3-cp38-cp38-manylinux1_x86_64.whl (10.0 MB)
Requirement already satisfied: python-dateutil>=2.6.1 in /home/sb/.local/lib/python3.8/site-packages (from pandas==1.0.3->copro==0.0.7b0) (2.8.1)
Requirement already satisfied: pytz>=2017.2 in /home/sb/.local/lib/python3.8/site-packages (from pandas==1.0.3->copro==0.0.7b0) (2020.4)
Collecting rasterio==1.1.0
  Using cached rasterio-1.1.0.tar.gz (2.1 MB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
    Preparing wheel metadata ... done
Requirement already satisfied: attrs in /home/sb/.local/lib/python3.8/site-packages (from rasterio==1.1.0->copro==0.0.7b0) (20.3.0)
Requirement already satisfied: simplejson in /usr/lib/python3/dist-packages (from rasterstats==0.14->copro==0.0.7b0) (3.13.2)
Requirement already satisfied: setuptools>=41.2 in /home/sb/.local/lib/python3.8/site-packages (from xarray==0.15.1->copro==0.0.7b0) (51.3.3)
Collecting affine
  Using cached affine-2.3.0-py2.py3-none-any.whl (15 kB)
Collecting Click>=7.0
  Using cached click-7.1.2-py2.py3-none-any.whl (82 kB)
Collecting cligj>=0.5
  Using cached cligj-0.7.1-py3-none-any.whl (7.1 kB)
Collecting pyproj>=2.2.0
  Using cached pyproj-3.0.0.post1-cp38-cp38-manylinux2010_x86_64.whl (6.5 MB)
Requirement already satisfied: certifi in /home/sb/.local/lib/python3.8/site-packages (from pyproj>=2.2.0->geopandas==0.8.0->copro==0.0.7b0) (2020.11.8)
Requirement already satisfied: six>=1.5 in /home/sb/.local/lib/python3.8/site-packages (from python-dateutil>=2.6.1->pandas==1.0.3->copro==0.0.7b0) (1.15.0)
Requirement already satisfied: scipy in /home/sb/.local/lib/python3.8/site-packages (from rioxarray>=0.0.26->copro==0.0.7b0) (1.5.4)
Requirement already satisfied: joblib>=0.11 in /home/sb/.local/lib/python3.8/site-packages (from scikit-learn>=0.22.1->copro==0.0.7b0) (1.0.0)
Collecting snuggs>=1.4.1
  Using cached snuggs-1.4.7-py3-none-any.whl (5.4 kB)
Requirement already satisfied: pyparsing>=2.1.6 in /home/sb/.local/lib/python3.8/site-packages (from snuggs>=1.4.1->rasterio==1.1.0->copro==0.0.7b0) (2.4.7)
Collecting threadpoolctl>=2.0.0
  Using cached threadpoolctl-2.1.0-py3-none-any.whl (12 kB)
Collecting click-plugins
  Using cached click_plugins-1.1.1-py2.py3-none-any.whl (7.5 kB)
Collecting fiona
  Using cached Fiona-1.8.18-cp38-cp38-manylinux1_x86_64.whl (14.7 MB)
Collecting munch
  Using cached munch-2.5.0-py2.py3-none-any.whl (10 kB)
Collecting shapely
  Using cached Shapely-1.7.1-cp38-cp38-manylinux1_x86_64.whl (1.0 MB)
Building wheels for collected packages: rasterio
  Building wheel for rasterio (PEP 517) ... error
  ERROR: Command errored out with exit status 1:
   command: /usr/bin/python3.8 /home/sb/.local/lib/python3.8/site-packages/pip/_vendor/pep517/_in_process.py build_wheel /tmp/tmps3p_rqyy
       cwd: /tmp/pip-install-attrp5jq/rasterio_5cbe5aacf11a4580b94352e17fe8bfb9
  Complete output (77 lines):
  INFO:root:GDAL API version obtained from gdal-config: 3.0.4
  running bdist_wheel
  running build
  running build_py
  INFO:root:Generating grammar tables from /usr/lib/python3.8/lib2to3/Grammar.txt
  INFO:root:Generating grammar tables from /usr/lib/python3.8/lib2to3/PatternGrammar.txt
  creating build
  creating build/lib.linux-x86_64-3.8
  creating build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/enums.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/features.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/errors.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/dtypes.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/transform.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/merge.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/mask.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/io.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/session.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/fill.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/tools.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/path.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/profiles.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/vrt.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/plot.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/crs.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/compat.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/drivers.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/warp.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/env.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/control.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/sample.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/coords.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/windows.py -> build/lib.linux-x86_64-3.8/rasterio
  copying ./rasterio/__init__.py -> build/lib.linux-x86_64-3.8/rasterio
  creating build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/info.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/blocks.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/main.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/shapes.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/transform.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/rm.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/merge.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/mask.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/rasterize.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/overview.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/clip.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/insp.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/helpers.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/stack.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/options.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/calc.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/warp.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/bounds.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/gcps.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/env.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/convert.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/sample.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/edit_info.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  copying ./rasterio/rio/__init__.py -> build/lib.linux-x86_64-3.8/rasterio/rio
  running egg_info
  writing rasterio.egg-info/PKG-INFO
  writing dependency_links to rasterio.egg-info/dependency_links.txt
  writing entry points to rasterio.egg-info/entry_points.txt
  writing requirements to rasterio.egg-info/requires.txt
  writing top-level names to rasterio.egg-info/top_level.txt
  reading manifest file 'rasterio.egg-info/SOURCES.txt'
  writing manifest file 'rasterio.egg-info/SOURCES.txt'
  running build_ext
  building 'rasterio._base' extension
  creating build/temp.linux-x86_64-3.8
  creating build/temp.linux-x86_64-3.8/rasterio
  x86_64-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/local/lib/python3.8/dist-packages/numpy-1.18.1-py3.8-linux-x86_64.egg/numpy/core/include -I/home/sb/anaconda3/envs/copro/include -I/usr/include/python3.8 -c rasterio/_base.c -o build/temp.linux-x86_64-3.8/rasterio/_base.o -Wno-unused-parameter -Wno-unused-function
  rasterio/_base.c:42:10: fatal error: Python.h: No such file or directory
   #include "Python.h"
            ^~~~~~~~~~
  compilation terminated.
  error: command 'x86_64-linux-gnu-gcc' failed with exit status 1
  ----------------------------------------
  ERROR: Failed building wheel for rasterio
Failed to build rasterio
ERROR: Could not build wheels for rasterio which use PEP 517 and cannot be installed directly