Ion Torrent - Recursive plugin call

launch.sh

#!/bin/bash

VERSION="0.1"

#Set the URL for the API requests
plugin_url=http://127.0.0.1/rundb/api/v1/results/${RUNINFO__PK}/plugin/

#Set the HTTP Headers
api_header="Content-Type: application/json;Accept: application/json"

#Count the number of plugins with status of "Started" 
running=`curl --silent \
 --header ${api_header} \
 --location ${plugin_url} |
jsonpipe |
grep pluginState/ |
grep -v ${RUNINFO__PLUGIN_NAME} |
awk '{print $2}'|
grep "Started" |
wc -l`

#write out the json to rerun the plugin
echo {\"plugin\":[\"${RUNINFO__PLUGIN_NAME}\"]} > post.json


if [ "$running" -ne "0" ]
then
  #if there are plugins still "started" then call this plugin again
  echo "There are still plugins running, calling this plugin again."
  #wait a few seconds first
  sleep 10 
  curl --silent --header ${api_header} \
   --location ${plugin_url} \
   --request POST \
   --data "@post.json"
else   
  #All of the other plugins have finished -- do your final step here
  echo "Done!"
fi