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Philipp A. flying-sheep

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flying-sheep / #README.md
Last active December 16, 2024 16:19
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flying-sheep / test.rst
Created November 18, 2024 10:27

Note

Title

Body

@flying-sheep
flying-sheep / #holoviz anndata interface.md
Last active October 28, 2024 15:42

 

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flying-sheep / #3168 repro
Last active October 15, 2024 14:56
.
@flying-sheep
flying-sheep / hatch.toml
Created August 27, 2024 14:35
My scanpy hatch.toml
[metadata]
allow-direct-references = true
[envs.default]
installer = "uv"
#dependencies = ["ipykernel", "snakeviz", "py-spy", "ipywidgets", "ipynbname", "ipympl"]
features = ["dev"]
[envs.hatch-test]
default-args = []
@flying-sheep
flying-sheep / ._README.md
Last active August 27, 2024 10:58

MyST include reproducer

Run via something like

uv run conf.py

or

@flying-sheep
flying-sheep / find_subpackage.py
Last active August 13, 2024 17:39
Find subpackages of a namespace package in a distribution
import importlib
def find_subpackage(dist: str, ns_name: str):
"""Finds subpackages of a namespace package
Within a distribution `dist`, given a known toplevel namespace package `ns_name`,
this finds all 2 level deep package:
>>> list(find_subpackage("jaraco-classes", "jaraco"))
["jaraco.classes"]
@flying-sheep
flying-sheep / memray-flamegraph-anndata-mem.html
Created April 30, 2024 10:09
Flamegraph for anndata#1482
This file has been truncated, but you can view the full file.
<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8" />
<meta http-equiv="X-UA-Compatible" content="IE=edge" />
<meta name="viewport" content="width=device-width, initial-scale=1" />
<title>memray - flamegraph report</title>
<link rel="stylesheet" href="https://cdn.jsdelivr.net/npm/[email protected]/dist/css/bootstrap.min.css">
@flying-sheep
flying-sheep / igraph-defaults-violin.ipynb
Last active February 16, 2024 12:59
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@flying-sheep
flying-sheep / scrublet bench results.json
Last active February 2, 2024 09:43
{
"upstream": {
"cline-ch": {
"shape": [
7954,
3465
],
"doublets": [
0,
43,