dmwelch

from nipype.pipeline.engine import Workflow, Node, MapNode
from nipype.interfaces.io import DataGrabber
from nipype.interfaces.utility import IdentityInterface
from nipype.interfaces.utility import Function
from nipype.utils.misc import getsource
from SEMTools.filtering.denoising import UnbiasedNonLocalMeans
from SEMTools.segmentation.specialized import BRAINSConstellationDetector
from SEMTools.utilities.brains import BRAINSLandmarkInitializer
from SEMTools.registration.brainsresample import BRAINSResample
from SEMTools.segmentation.specialized import BRAINSROIAuto

dmwelch

#!/bin/bash
############################################################################
#                                                                          #
# Script:	postXNAT.sh                                                    #
#                                                                          #
# Task:	    Upload entire experiment in ZIP format via XNAT REST client    #
#           Overwrites previously uploaded experiment, if it exists        #
#		                                                                   #
# Author:       David Welch                                                #
# Contact:      david dot m period welch at gmail dot com                  #

dmwelch

$ sudo brew doctor
Password:
Your system is ready to brew.
$ sudo brew --config
Password:
HOMEBREW_VERSION: 0.9.4
ORIGIN: https://github.com/mxcl/homebrew.git
HEAD: 705b5e133d8334cae66710fac1c14ed8f8713d6b
HOMEBREW_PREFIX: /usr/local
HOMEBREW_CELLAR: /usr/local/Cellar

dmwelch

#! /usr/bin/env python

import argparse

from nipype.utils.filemanip import loadcrash

def display_crash_files(crashfile, rerun):
    "display crash file content and rerun if required"
    crash_data = loadcrash(crashfile)
    node = crash_data['node']