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Created May 24, 2019 22:17
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SlurmCI 38d5e8854be25f225aa20c3f44d619d69c6b27b8
WARNING: Method definition nlsolve_f(Any) in module OrdinaryDiffEq at /home/spjbyrne/.slurmci/clima_cpu/packages/OrdinaryDiffEq/TUKTm/src/integrators/integrator_utils.jl:359 overwritten in module StochasticDiffEq at /home/spjbyrne/.slurmci/clima_cpu/packages/StochasticDiffEq/Y07eQ/src/integrators/integrator_utils.jl:340.
WARNING: Method definition nlsolve_f(Any, Any) in module OrdinaryDiffEq at /home/spjbyrne/.slurmci/clima_cpu/packages/OrdinaryDiffEq/TUKTm/src/integrators/integrator_utils.jl:358 overwritten in module StochasticDiffEq at /home/spjbyrne/.slurmci/clima_cpu/packages/StochasticDiffEq/Y07eQ/src/integrators/integrator_utils.jl:339.
Updating registry at `~/.slurmci/clima_cpu/registries/General`
Updating git-repo `https://github.com/JuliaRegistries/General.git`
[?25l[?25h Building SpecialFunctions → `~/.slurmci/clima_cpu/packages/SpecialFunctions/fvheQ/deps/build.log`
Building MbedTLS ─────────→ `~/.slurmci/clima_cpu/packages/MbedTLS/X4xar/deps/build.log`
Building Arpack ──────────→ `~/.slurmci/clima_cpu/packages/Arpack/cu5By/deps/build.log`
Building Rmath ───────────→ `~/.slurmci/clima_cpu/packages/Rmath/Py9gH/deps/build.log`
Building MPI ─────────────→ `~/.slurmci/clima_cpu/packages/MPI/b4xgC/deps/build.log`
Building CodecZlib ───────→ `~/.slurmci/clima_cpu/packages/CodecZlib/9jDi1/deps/build.log`
Building LightXML ────────→ `~/.slurmci/clima_cpu/packages/LightXML/k3mJ4/deps/build.log`
Building Sundials ────────→ `~/.slurmci/clima_cpu/packages/Sundials/zdInw/deps/build.log`
Precompiling project...
Precompiling MPI
Precompiling DifferentialEquations
Precompiling CLIMA
[ Info: (Array, Float64, 2)
┌ Info: Starting
└ norm(Q₀) = 1.4867013014056337e+02
┌ Info: Finished
│ norm(Q) = 1.4866994595248894e+02
│ norm(Q) / norm(Q₀) = 9.9999876109562658e-01
└ norm(Q) - norm(Q₀) = -1.8418807442799334e-04
[ Info: (Array, Float64, 3)
┌ Info: Starting
└ norm(Q₀) = 4.7047089068182589e+02
┌ Info: Finished
│ norm(Q) = 4.7046926313097612e+02
│ norm(Q) / norm(Q₀) = 9.9999654059181553e-01
└ norm(Q) - norm(Q₀) = -1.6275508497756164e-03
[ Info: (Array, Float64, 2)
┌ Info: Starting
└ norm(Q₀) = 1.4867013014056337e+02
┌ Info: Finished
│ norm(Q) = 1.4867003154824238e+02
│ norm(Q) / norm(Q₀) = 9.9999933683840259e-01
└ norm(Q) - norm(Q₀) = -9.8592320995294358e-05
[ Info: (Array, Float64, 3)
┌ Info: Starting
└ norm(Q₀) = 4.7047089068182589e+02
┌ Info: Finished
│ norm(Q) = 4.7046956300592569e+02
│ norm(Q) / norm(Q₀) = 9.9999717798502208e-01
└ norm(Q) - norm(Q₀) = -1.3276759001996652e-03
[ Info: (Array, Float64, 2)
┌ Info: Starting
└ norm(Q₀) = 1.4867013014056337e+02
┌ Info: Finished
│ norm(Q) = 1.4866999224494174e+02
│ norm(Q) / norm(Q₀) = 9.9999907247258413e-01
└ norm(Q) - norm(Q₀) = -1.3789562163424307e-04
[ Info: (Array, Float64, 3)
┌ Info: Starting
└ norm(Q₀) = 4.7047089068182589e+02
┌ Info: Finished
│ norm(Q) = 4.7046931596609670e+02
│ norm(Q) / norm(Q₀) = 9.9999665289445028e-01
└ norm(Q) - norm(Q₀) = -1.5747157291912117e-03
[ Info: (Array, Float64, 2)
┌ Info: Starting
└ norm(Q₀) = 1.4867013014056337e+02
┌ Info: Finished
│ norm(Q) = 1.4866989208978598e+02
│ norm(Q) / norm(Q₀) = 9.9999839879889008e-01
└ norm(Q) - norm(Q₀) = -2.3805077739780245e-04
[ Info: (Array, Float64, 3)
┌ Info: Starting
└ norm(Q₀) = 4.7047089068182589e+02
┌ Info: Finished
│ norm(Q) = 4.7046857245331756e+02
│ norm(Q) / norm(Q₀) = 9.9999507253572062e-01
└ norm(Q) - norm(Q₀) = -2.3182285083294119e-03
[ Info: (Array, Float64, 3)
┌ Info: Starting
│ norm(Q₀) = 4.3947701840568536e+00
└ sum(Q₀) = 2.9078612659396555e+01
┌ Info: Finished
│ norm(Q) = 4.4058125918361855e+00
│ norm(Q) / norm(Q₀) = 1.0025126246235563e+00
│ norm(Q) - norm(Q₀) = 1.1042407779331853e-02
│ max mass loss = 0.0000000000000000e+00
│ max mass gain = 0.0000000000000000e+00
└ initial mass = 2.9078612659396555e+01
ERROR: ERROR: ERROR: could not open file /central/home/spjbyrne/projects/slurmci/sources/38d5e8854be25f225aa20c3f44d619d69c6b27b8/test/DGmethods/compressible_Navier_Stokes/mms_bc.jllcould not open file /central/home/spjbyrne/projects/slurmci/sources/38d5e8854be25f225aa20c3f44d619d69c6b27b8/test/DGmethods/compressible_Navier_Stokes/mms_bc.jllcould not open file /central/home/spjbyrne/projects/slurmci/sources/38d5e8854be25f225aa20c3f44d619d69c6b27b8/test/DGmethods/compressible_Navier_Stokes/mms_bc.jll
Stacktrace:
Stacktrace:
Stacktrace:
[1]
[1]
[1] include at ./boot.jl:326 [inlined]
[2] include at ./boot.jl:326 [inlined]
[2] include at ./boot.jl:326 [inlined]
[2] include_relative(include_relative(include_relative(::::::Module, ::StringModule, ::String) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] exec_options(::Base.JLOptions) at ./client.jl:267
[5] _start() at ./client.jl:436
Module, ::String) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] exec_options(::Base.JLOptions) at ./client.jl:267
[5] _start() at ./client.jl:436
) at ./loading.jl:1038
[3] include(::Module, ::String) at ./sysimg.jl:29
[4] exec_options(::Base.JLOptions) at ./client.jl:267
[5] _start() at ./client.jl:436
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
-------------------------------------------------------
--------------------------------------------------------------------------
mpiexec detected that one or more processes exited with non-zero status, thus causing
the job to be terminated. The first process to do so was:
Process name: [[12155,1],0]
Exit code: 1
--------------------------------------------------------------------------
┌ Error: Exception while generating log record in module Main at /central/home/spjbyrne/projects/slurmci/sources/38d5e8854be25f225aa20c3f44d619d69c6b27b8/test/DGmethods/sphere/advection_sphere.jl:337
│ exception =
│ UndefVarError: dim not defined
│ Stacktrace:
│ [1] top-level scope at ./logging.jl:319
│ [2] include at ./boot.jl:326 [inlined]
│ [3] include_relative(::Module, ::String) at ./loading.jl:1038
│ [4] include(::Module, ::String) at ./sysimg.jl:29
│ [5] exec_options(::Base.JLOptions) at ./client.jl:267
│ [6] _start() at ./client.jl:436
└ @ Main /central/home/spjbyrne/projects/slurmci/sources/38d5e8854be25f225aa20c3f44d619d69c6b27b8/test/DGmethods/sphere/advection_sphere.jl:337
┌ Info: Finished
│ error = 2.1334545498364027e-02
└ Δmass = 1.8480965431931998e-16
command ntasks jobid status elapsed
.slurmci/cpu-init.sh 4567082 00:02:59
.slurmci/cpu.sh test/DGmethods/Euler/isentropic_vortex_standalone.jl ntasks=3 4567083 00:00:58
.slurmci/cpu.sh test/DGmethods/Euler/isentropic_vortex_standalone_aux.jl ntasks=3 4567084 00:01:00
.slurmci/cpu.sh test/DGmethods/Euler/isentropic_vortex_standalone_source.jl ntasks=3 4567085 00:01:05
.slurmci/cpu.sh test/DGmethods/Euler/isentropic_vortex_standalone_bc.jl ntasks=3 4567086 00:00:57
.slurmci/cpu.sh test/DGmethods/conservation/sphere.jl ntasks=3 4567087 00:00:52
.slurmci/cpu.sh test/DGmethods/compressible_Navier_Stokes/mms_bc.jll ntasks=3 4567088 00:00:04
.slurmci/cpu.sh test/DGmethods/sphere/advection_sphere.jl ntasks=2 4567089 00:00:49
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