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boegelbot/easybuild_test_report_3463_easybuilders_preasybuild-easyblocks_20243511-UTC-13-35-45.md

Created October 11, 2024 13:35
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EasyBuild test report for easybuilders/easybuild-easyblocks PR(s) #3463
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easybuild_test_report_3463_easybuilders_preasybuild-easyblocks_20243511-UTC-13-35-45.md

Test report for easyblock PR(s) easybuilders/easybuild-easyblocks#3463

Test result

Build succeeded for 12 out of 12 (4 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS GROMACS-2023.3-foss-2023a.eb
  • SUCCESS GROMACS-2021.3-foss-2021a.eb
  • SUCCESS HOOMD-blue-4.0.1-foss-2022a.eb
  • SUCCESS tabixpp-1.1.2-GCC-12.3.0.eb
  • SUCCESS intervaltree-0.1-GCCcore-12.3.0.eb
  • SUCCESS fastahack-1.0.0-GCCcore-12.3.0.eb
  • SUCCESS filevercmp-20191210-GCCcore-12.3.0.eb
  • SUCCESS fsom-20151117-GCCcore-12.3.0.eb
  • SUCCESS multichoose-1.0.3-GCCcore-12.3.0.eb
  • SUCCESS smithwaterman-20160702-GCCcore-12.3.0.eb
  • SUCCESS WFA2-2.3.4-GCCcore-12.3.0.eb
  • SUCCESS vcflib-1.0.9-gfbf-2023a-R-4.3.2.eb

Time info

  • start: Fri, 11 Oct 2024 11:30:19 +0000 (UTC)
  • end: Fri, 11 Oct 2024 13:35:45 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.9.5.dev0-r3b01ba9f7171ac9a3934099e479cc709620d4c46
  • easybuild-easyblocks version: 4.9.5.dev0-r11afb88ec55e0ca431cbe823696aa43e2a9bfca8
  • command line:
eb --include-easyblocks-from-pr 3463 --debug --rebuild --robot --upload-test-report --download-timeout=1000 GROMACS-2023.3-foss-2023a.eb GROMACS-2021.3-foss-2021a.eb HOOMD-blue-4.0.1-foss-2022a.eb vcflib-1.0.9-gfbf-2023a-R-4.3.2.eb --installpath /tmp/boegelbot/pr3463
  • full configuration (includes defaults):
--accept-eula-for='.*'
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/boegelbot'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/project/boegelbot/Rocky8/haswell/containers'
--cuda-compute-capabilities='7.0'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-silence-hook-trigger
--disable-skip
--disable-skip-extensions
--disable-skip-sanity-check
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--download-timeout='1000.0'
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--extra-source-urls=''
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--from-pr=''
--generate-devel-module
--github-user='boegelbot'
--hooks='/home/boegelbot/boegelbot/eb_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr='3463'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/tmp/boegelbot/pr3463'
--job-backend='GC3Pie'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/home/boegelbot/boegelbot'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/project/boegelbot/Rocky8/haswell/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/project/boegelbot/Rocky8/haswell'
--rebuild
--repository='FileRepository'
--repositorypath='/project/boegelbot/Rocky8/haswell/ebfiles_repo'
--robot-paths=''
--robot='/home/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--show-progress-bar
--silence-deprecation-warnings=''
--sourcepath='/project/boegelbot/sources:/project/maintainers/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 16
  • cpu arch: x86_64
  • cpu arch name: haswell
  • cpu model: Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz
  • cpu speed: 3196.296
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=https://bugs.rockylinux.org/ --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.5.0 20210514 (Red Hat 8.5.0-20) (GCC) ;
  • glibc version: 2.28
  • hostname: cnx2
  • os name: Rocky Linux
  • os type: Linux
  • os version: 8.9
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Jan 15 2024, 23:09:02) ; [GCC 8.5.0 20210514 (Red Hat 8.5.0-20)]
  • system gcc path: /usr/bin/gcc
  • system python path: None
  • total memory: 64386

List of loaded modules

  • (none)

Environment

BASH_ENV = /usr/share/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
BASH_FUNC_module%% = () {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD shell "$@")" && eval "$(${LMOD_SETTARG_CMD:-:} -s sh)";
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
BASH_FUNC_which%% = () {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
CLUSTER_NAME = 
CPU_ARCH = haswell
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/60004/bus
DEBUGINFOD_URLS = https://debuginfod.centos.org/ 
EASYBUILD_ACCEPT_EULA_FOR = .*
EASYBUILD_BUILDPATH = /tmp/boegelbot
EASYBUILD_CUDA_COMPUTE_CAPABILITIES = 7.0
EASYBUILD_GITHUB_USER = boegelbot
EASYBUILD_HOOKS = /home/boegelbot/boegelbot/eb_hooks.py
EASYBUILD_PREFIX = /project/boegelbot/Rocky8/haswell
EASYBUILD_SOURCEPATH = /project/boegelbot/sources:/project/maintainers/sources
EB_ARGS = GROMACS-2023.3-foss-2023a.eb GROMACS-2021.3-foss-2021a.eb HOOMD-blue-4.0.1-foss-2022a.eb vcflib-1.0.9-gfbf-2023a-R-4.3.2.eb --installpath /tmp/boegelbot/pr3463
EB_CONTAINER = 
EB_PR = 3463
EB_PYTHON = python3
EB_REPO = easybuild-easyblocks
EB_SCRIPT_PATH = /home/boegelbot/easybuild/easybuild-framework/eb
EDITOR = vim
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
FI_PROVIDER = ^psm3
GCC_COLORS = error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01
HISTCONTROL = ignoredups
HISTFILESIZE = 100000000
HISTSIZE = 1000000
HISTTIMEFORMAT = %F %T 
HOME = /home/boegelbot
HOSTNAME = cnx2
INTEL_LICENSE_FILE = /project/maintainers/licenses/intel.lic
I_MPI_FABRICS = shm
LANG = en_US.UTF-8
LD_LIBRARY_PATH = /opt/software/slurm/lib64:/opt/software/slurm/lib64
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_VERSION = 8.7.32
LMOD_sys = Linux
LOGNAME = boegelbot
LS_COLORS = 
MAIL = /var/spool/mail/boegelbot
MANPATH = /opt/software/slurm/share/man:/opt/software/slurm/share/man:/usr/share/lmod/lmod/share/man::/opt/puppetlabs/puppet/share/man
MODULEPATH = /project/boegelbot/Rocky8/haswell/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /usr/share/modulefiles
MODULESHOME = /usr/share/lmod/lmod
OLDPWD = /home/boegelbot
PATH = /home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/.local/bin:/home/boegelbot/.yarn/bin:/home/boegelbot/.config/yarn/global/node_modules/.bin:/home/boegelbot/.local/bin:/opt/software/slurm/bin:/home/boegelbot/easybuild//easybuild-framework:/home/boegelbot/.local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin
PROMPT_COMMAND = history -a; history -c; history -r
history -a; history -c; history -r
PWD = /home/boegelbot/boegelbot
PYTHONOPTIMIZE = 1
PYTHONPATH = /home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/easybuild/easybuild-easyblocks:/home/boegelbot/easybuild/easybuild-easyconfigs
RSNT_ARCH = avx2
SHELL = /bin/sh
SHLVL = 5
SINFO_FORMAT = %9P %5a %8s %.10l %.6c %.6z %.7D %10T %N
SLURMD_NODENAME = cnx2
SLURM_CLUSTER_NAME = generoso
SLURM_CONF = /etc/slurm/slurm.conf
SLURM_CPUS_ON_NODE = 16
SLURM_GET_USER_ENV = 1
SLURM_GTIDS = 0
SLURM_HOME = /opt/software/slurm
SLURM_JOBID = 14447
SLURM_JOB_CPUS_PER_NODE = 16
SLURM_JOB_GID = 2006
SLURM_JOB_ID = 14447
SLURM_JOB_NAME = test_PR_3463
SLURM_JOB_NODELIST = cnx2
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = normal
SLURM_JOB_QOS = normal
SLURM_JOB_UID = 60004
SLURM_JOB_USER = boegelbot
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 4000
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = cnx2
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 16
SLURM_NTASKS = 16
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_RESTART_COUNT = 0
SLURM_SUBMIT_DIR = /home/boegelbot/boegelbot
SLURM_SUBMIT_HOST = login1
SLURM_TASKS_PER_NODE = 16
SLURM_TASK_PID = 1710320
SLURM_TIME_FORMAT = relative
SLURM_TMPDIR = /localscratch/boegelbot.14447.0
SLURM_TOPOLOGY_ADDR = cnx2
SLURM_TOPOLOGY_ADDR_PATTERN = node
SLURM_WORKING_CLUSTER = generoso:10.0.1.215:6817:9216:109
SQUEUE_FORMAT = %.8i %.12u %.50j %.3t %9r %10S %.10M %.10L %.5D %.4C %N
TMPDIR = /tmp
USER = boegelbot
XDG_RUNTIME_DIR = /localscratch/boegelbot.14447.0
XDG_SESSION_ID = 66195
_ = /usr/bin/python3
_ModuleTable001_ = 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
_ModuleTable002_ = czovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4Oi91c3Ivc2hhcmUvbW9kdWxlZmlsZXMvQ29yZTovdXNyL3NoYXJlL2xtb2QvbG1vZC9tb2R1bGVmaWxlcy9Db3JlIiwKfQo=
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_MODULEPATH = /project/boegelbot/Rocky8/haswell/modules/all:1;/etc/modulefiles:1;/usr/share/modulefiles:1;/usr/share/modulefiles/Linux:1;/usr/share/modulefiles/Core:1;/usr/share/lmod/lmod/modulefiles/Core:1
which_declare = declare -f
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