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September 6, 2024 08:47
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(partial) EasyBuild log for failed build of /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb (easyblock PR(s) #3431)
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== 2024-09-06 10:47:50,040 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,040 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,040 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,040 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,040 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,040 templates.py:333 DEBUG name: parallel, config: None | |
== 2024-09-06 10:47:50,040 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,040 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,041 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,041 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,041 one.py:150 DEBUG Not copying '__builtins__' variable from parsed easyconfig | |
== 2024-09-06 10:47:50,043 one.py:529 DEBUG Extracted comments: | |
{'above': {'max_py_majver': ['# The setuptools in this EasyConfig is the latest that works for Python 3.6, but is too ' | |
'old for Python 3.12', | |
'# See ' | |
'https://github.com/easybuilders/easybuild-easyconfigs/pull/21269#discussion_r1741570244'], | |
'osdependencies': ["# Required by lxml, which is installed by ReFrame's bootstrap installer"], | |
'req_py_majver': ['# Listed as python_requires in ' | |
'https://github.com/reframe-hpc/reframe/blob/v4.6.2/setup.cfg']}, | |
'header': ['# This EasyConfig is made with older setuptools and wheel versions, so that it still works with ' | |
'Python-3.6.X', | |
'# For newer python versions, we suggest to use ReFrame-4.6.2.eb (without suffix)'], | |
'inline': {}, | |
'iterabove': {'exts_list': {" 'download_dep_fail': False,": ['# Deps are downloaded to %(installdir)/external, ' | |
"which won't polute the PYTHONPATH, so is ok"], | |
" 'modulename': False,": ['# Set modulename to False, as to skip the ' | |
'sanity_check-step from extension.py (python -c "import ' | |
'reframe")', | |
'# This step would fail, since the regular python ' | |
"interpreter wouldn't find the additional packages in", | |
"# %(installdir)/external. That's fine, as ReFrame " | |
'should never be imported directly, only through the', | |
'# reframe command.'], | |
" 'sanity_pip_check': False,": ['# ReFrame uses its custom sys.path to find ' | |
'necessary packages, they are not on PYTYHONPATH', | |
'# Thus, the regular pip sanity check is expected ' | |
'to fail, even if ReFrame would run just fine'], | |
" ('pip', '21.3.1', {": ['# stick to pip 21.3.1, which is compatible with Python 3.6', | |
"# we still need pip outside of ReFrame's external " | |
'dependencies, since the install cmd uses pip'], | |
" ('reframe', version, {": ["# ReFrame's bootstrap script is intended to run with zero " | |
'dependencies. It downloads all python deps for ReFrame', | |
"# into a %(installdir)/external directory. ReFrame's main " | |
"executable (reframe) adds this dir to python's sys.path", | |
'# so that ReFrame (and only ReFrame) will find & use all ' | |
'of these dependencies.', | |
'# In EasyBuild, we should adhere to this installation ' | |
'method because a) it is how ReFrame is meant to be used ' | |
'and', | |
'# b) it isolates all of ReFrame dependencies from any ' | |
'other python code you run. Thus, there is no chance that', | |
'# a test will pick up on any python deps from ReFrame ' | |
'itself.', | |
'# For this to work, we need to disable download_dep_fail ' | |
'and sanity_pip_check, as both are _expected_ to fail', | |
'# for this setup.'], | |
" ('setuptools', '59.6.0', {": ['# Require new enough setuptools to install with e.g. ' | |
'pyproject.toml', | |
'# 59.6.0 is the latest compatible with Python 3.6'], | |
" ('wheel', '0.37.1', {": ['# stick to wheel 0.37.1, which is compatible with Python ' | |
'3.6']}}, | |
'iterinline': {}, | |
'tail': []} | |
== 2024-09-06 10:47:50,043 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2024-09-06 10:47:50,044 easyconfig.py:1265 DEBUG Dumped easyconfig: # This EasyConfig is made with older setuptools and wheel versions, so that it still works with Python-3.6.X | |
# For newer python versions, we suggest to use ReFrame-4.6.2.eb (without suffix) | |
easyblock = 'PythonBundle' | |
name = 'ReFrame' | |
version = '4.6.2' | |
versionsuffix = '-Python-3.6' | |
homepage = 'https://github.com/reframe-hpc/reframe' | |
description = "ReFrame is a framework for writing regression tests for HPC systems." | |
toolchain = {'name': 'system', 'version': 'system'} | |
# Required by lxml, which is installed by ReFrame's bootstrap installer | |
osdependencies = [ | |
'libxml2', | |
('libxslt', 'libxslt1.1'), | |
] | |
postinstallcmds = [ | |
"cp -a tools examples %(installdir)s", | |
"mkdir -p %(installdir)s/share && cp -a share/completions %(installdir)s/share/completions", | |
"sed -i 's@/\\(python[0-9.]*\\)$@/\\1 -S@g' %(installdir)s/bin/%(namelower)s", | |
] | |
allow_system_deps = [('Python', '3.12.3')] | |
exts_defaultclass = 'PythonPackage' | |
exts_filter = ( | |
'python -c "import %(ext_name)s"', | |
'', | |
) | |
# Listed as python_requires in https://github.com/reframe-hpc/reframe/blob/v4.6.2/setup.cfg | |
req_py_majver = 3 | |
req_py_minver = 6 | |
# The setuptools in this EasyConfig is the latest that works for Python 3.6, but is too old for Python 3.12 | |
# See https://github.com/easybuilders/easybuild-easyconfigs/pull/21269#discussion_r1741570244 | |
max_py_majver = 3 | |
max_py_minver = 11 | |
use_pip = True | |
exts_default_options = { | |
'buildcmd': None, | |
'check_ldshared': None, | |
'download_dep_fail': True, | |
'install_src': None, | |
'install_target': 'install', | |
'max_py_majver': 3, | |
'max_py_minver': 11, | |
'options': {}, | |
'pip_ignore_installed': True, | |
'pip_no_index': None, | |
'pip_verbose': None, | |
'req_py_majver': 3, | |
'req_py_minver': 6, | |
'runtest': True, | |
'sanity_pip_check': False, | |
'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], | |
'testinstall': False, | |
'unpack_sources': None, | |
'unversioned_packages': [], | |
'use_pip': True, | |
'use_pip_editable': False, | |
'use_pip_extras': None, | |
'use_pip_for_deps': False, | |
'use_pip_requirement': False, | |
'zipped_egg': False, | |
} | |
exts_list = [ | |
('pip', '21.3.1', {'use_pip': False, 'checksums': ['fd11ba3d0fdb4c07fbc5ecbba0b1b719809420f25038f8ee3cd913d3faa3033a']}), | |
('setuptools', '59.6.0', {'use_pip': False, 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], 'checksums': ['22c7348c6d2976a52632c67f7ab0cdf40147db7789f9aed18734643fe9cf3373']}), | |
('wheel', '0.37.1', {'source_tmpl': 'wheel-%(version)s-py2.py3-none-any.whl', 'checksums': ['4bdcd7d840138086126cd09254dc6195fb4fc6f01c050a1d7236f2630db1d22a']}), | |
('reframe', '4.6.2', {'download_dep_fail': False, 'sanity_pip_check': False, 'modulename': False, 'preinstallopts': 'export PATH=%(installdir)s/bin:$PATH && ./bootstrap.sh +docs +pygelf && cp -r external %(installdir)s && ', 'source_tmpl': 'v%(version)s.tar.gz', 'source_urls': ['https://github.com/reframe-hpc/reframe/archive/'], 'checksums': ['d3343815ee3d2c330b91a1cdb924ba184119ed7d9fc88a4a754b939a4259df82']}), | |
] | |
sanity_check_paths = { | |
'files': ['bin/%(namelower)s', 'share/completions/%(namelower)s.bash', 'share/completions/%(namelower)s.fish', 'share/completions/%(namelower)s.tcsh'], | |
'dirs': ['external', 'lib', 'tools', 'examples'], | |
} | |
sanity_check_commands = ['%(namelower)s -V'] | |
moduleclass = 'devel' | |
== 2024-09-06 10:47:50,044 filetools.py:1912 INFO Creating directory /tmp/eb-yp9tjf0b/reprod_20240906104750_348254 (parents: True, set_gid: False, sticky: False) | |
== 2024-09-06 10:47:50,044 easyblock.py:4482 INFO Dumped easyconfig instance to /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,045 filetools.py:1912 INFO Creating directory /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/easyblocks (parents: True, set_gid: False, sticky: False) | |
== 2024-09-06 10:47:50,045 filetools.py:2425 INFO /data/apps/software/EasyBuild/4.9.2/lib/python3.12/site-packages/easybuild/easyblocks/generic/bundle.py copied to /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/easyblocks/bundle.py | |
== 2024-09-06 10:47:50,045 easyblock.py:4462 INFO Dumped easyblock bundle.py required for reproduction to /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/easyblocks | |
== 2024-09-06 10:47:50,045 filetools.py:1931 DEBUG Not creating existing path /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/easyblocks | |
== 2024-09-06 10:47:50,045 filetools.py:2425 INFO /tmp/eb-yp9tjf0b/included-easyblocks-nv_sd76y/easybuild/easyblocks/generic/pythonbundle.py copied to /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/easyblocks/pythonbundle.py | |
== 2024-09-06 10:47:50,045 easyblock.py:4462 INFO Dumped easyblock pythonbundle.py required for reproduction to /tmp/eb-yp9tjf0b/reprod_20240906104750_348254/easyblocks | |
== 2024-09-06 10:47:50,046 easyblock.py:2236 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2024-09-06 10:47:50,046 build_log.py:267 INFO building and installing ReFrame/4.6.2-Python-3.6... | |
== 2024-09-06 10:47:50,046 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/apps/software | |
== 2024-09-06 10:47:50,046 filetools.py:2005 INFO Lock /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock does not exist | |
== 2024-09-06 10:47:50,046 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/apps/software | |
== 2024-09-06 10:47:50,046 filetools.py:1946 INFO Creating lock at /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock... | |
== 2024-09-06 10:47:50,046 filetools.py:1912 INFO Creating directory /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock (parents: True, set_gid: False, sticky: False) | |
== 2024-09-06 10:47:50,046 filetools.py:1955 INFO Lock created: /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock | |
== 2024-09-06 10:47:50,046 easyblock.py:3941 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-09-06 10:47:50,046 build_log.py:267 INFO fetching files... | |
== 2024-09-06 10:47:50,046 easyblock.py:3950 INFO Starting fetch step | |
== 2024-09-06 10:47:50,046 easyconfig.py:1702 INFO Generating template values... | |
== 2024-09-06 10:47:50,047 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,047 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: parallel, config: None | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,047 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,047 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', builddir='/data/eb/build/ReFrame/4.6.2/system-system-Python-3.6', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', installdir='/data/apps/software/ReFrame/4.6.2-Python-3.6', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', start_dir='None', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,047 easyblock.py:3958 INFO Running method fetch_step part of step fetch | |
== 2024-09-06 10:47:50,047 easyblock.py:2358 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2024-09-06 10:47:50,048 easyblock.py:2386 INFO no sources provided | |
== 2024-09-06 10:47:50,048 easyblock.py:2401 INFO no patches provided | |
== 2024-09-06 10:47:50,048 templates.py:201 DEBUG config: {'name': 'pip', 'version': '21.3.1', 'options': {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': 3, 'req_py_minver': 6, 'max_py_majver': 3, 'max_py_minver': 11, 'sanity_pip_check': False, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': False, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'checksums': ['fd11ba3d0fdb4c07fbc5ecbba0b1b719809420f25038f8ee3cd913d3faa3033a']}, 'easyblock': None} | |
== 2024-09-06 10:47:50,048 templates.py:231 DEBUG version found in easyconfig is 21.3.1 | |
== 2024-09-06 10:47:50,048 templates.py:333 DEBUG name: name, config: pip | |
== 2024-09-06 10:47:50,048 templates.py:333 DEBUG name: version, config: 21.3.1 | |
== 2024-09-06 10:47:50,048 easyblock.py:809 INFO Considering directory in which easyconfig file is located when searching for pip-21.3.1.tar.gz: /home/bob/reframe | |
== 2024-09-06 10:47:50,049 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /data/apps/software/EasyBuild/4.9.2/bin/eb | |
== 2024-09-06 10:47:50,049 tools.py:288 INFO Also considering installation prefix /data/apps/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-09-06 10:47:50,049 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/cit-hpc-easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,049 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,049 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/fake_vsc_t401neti/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,049 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/included-easyblocks-nv_sd76y/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,049 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/reframe/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,049 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python312.zip/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/lib-dynload/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/setuptools/_vendor/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,050 tools.py:307 DEBUG Added /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-09-06 10:47:50,051 easyblock.py:851 INFO Found file pip-21.3.1.tar.gz at /data/eb/sources/r/ReFrame/extensions/pip-21.3.1.tar.gz | |
== 2024-09-06 10:47:50,051 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,058 easyblock.py:679 INFO md5 checksum for /data/eb/sources/r/ReFrame/extensions/pip-21.3.1.tar.gz: 0d3f27f4b7fecb33fd573e4f46cc6788 | |
== 2024-09-06 10:47:50,058 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,064 easyblock.py:679 INFO sha256 checksum for /data/eb/sources/r/ReFrame/extensions/pip-21.3.1.tar.gz: fd11ba3d0fdb4c07fbc5ecbba0b1b719809420f25038f8ee3cd913d3faa3033a | |
== 2024-09-06 10:47:50,064 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-09-06 10:47:50,064 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,070 filetools.py:1307 DEBUG Computed sha256 checksum for /data/eb/sources/r/ReFrame/extensions/pip-21.3.1.tar.gz: fd11ba3d0fdb4c07fbc5ecbba0b1b719809420f25038f8ee3cd913d3faa3033a (correct checksum: fd11ba3d0fdb4c07fbc5ecbba0b1b719809420f25038f8ee3cd913d3faa3033a) | |
== 2024-09-06 10:47:50,070 easyblock.py:685 INFO Checksum for extension source pip-21.3.1.tar.gz verified | |
== 2024-09-06 10:47:50,070 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-09-06 10:47:50,070 easyblock.py:726 DEBUG No patches found for extension pip. | |
== 2024-09-06 10:47:50,070 templates.py:201 DEBUG config: {'name': 'setuptools', 'version': '59.6.0', 'options': {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': 3, 'req_py_minver': 6, 'max_py_majver': 3, 'max_py_minver': 11, 'sanity_pip_check': False, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': False, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/s/setuptools/'], 'options': {}, 'checksums': ['22c7348c6d2976a52632c67f7ab0cdf40147db7789f9aed18734643fe9cf3373']}, 'easyblock': None} | |
== 2024-09-06 10:47:50,070 templates.py:231 DEBUG version found in easyconfig is 59.6.0 | |
== 2024-09-06 10:47:50,071 templates.py:333 DEBUG name: name, config: setuptools | |
== 2024-09-06 10:47:50,071 templates.py:333 DEBUG name: version, config: 59.6.0 | |
== 2024-09-06 10:47:50,071 easyblock.py:809 INFO Considering directory in which easyconfig file is located when searching for setuptools-59.6.0.tar.gz: /home/bob/reframe | |
== 2024-09-06 10:47:50,071 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /data/apps/software/EasyBuild/4.9.2/bin/eb | |
== 2024-09-06 10:47:50,071 tools.py:288 INFO Also considering installation prefix /data/apps/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-09-06 10:47:50,071 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/cit-hpc-easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,071 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,071 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/fake_vsc_t401neti/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,071 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/included-easyblocks-nv_sd76y/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,071 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/reframe/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,071 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python312.zip/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/lib-dynload/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/setuptools/_vendor/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 tools.py:307 DEBUG Added /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-09-06 10:47:50,072 easyblock.py:851 INFO Found file setuptools-59.6.0.tar.gz at /data/eb/sources/r/ReFrame/extensions/setuptools-59.6.0.tar.gz | |
== 2024-09-06 10:47:50,072 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,077 easyblock.py:679 INFO md5 checksum for /data/eb/sources/r/ReFrame/extensions/setuptools-59.6.0.tar.gz: 7d9cdfb85e905390a1d820fa5e9b01a2 | |
== 2024-09-06 10:47:50,077 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,085 easyblock.py:679 INFO sha256 checksum for /data/eb/sources/r/ReFrame/extensions/setuptools-59.6.0.tar.gz: 22c7348c6d2976a52632c67f7ab0cdf40147db7789f9aed18734643fe9cf3373 | |
== 2024-09-06 10:47:50,085 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-09-06 10:47:50,085 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,093 filetools.py:1307 DEBUG Computed sha256 checksum for /data/eb/sources/r/ReFrame/extensions/setuptools-59.6.0.tar.gz: 22c7348c6d2976a52632c67f7ab0cdf40147db7789f9aed18734643fe9cf3373 (correct checksum: 22c7348c6d2976a52632c67f7ab0cdf40147db7789f9aed18734643fe9cf3373) | |
== 2024-09-06 10:47:50,094 easyblock.py:685 INFO Checksum for extension source setuptools-59.6.0.tar.gz verified | |
== 2024-09-06 10:47:50,094 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-09-06 10:47:50,094 easyblock.py:726 DEBUG No patches found for extension setuptools. | |
== 2024-09-06 10:47:50,094 templates.py:201 DEBUG config: {'name': 'wheel', 'version': '0.37.1', 'options': {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': True, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': 3, 'req_py_minver': 6, 'max_py_majver': 3, 'max_py_minver': 11, 'sanity_pip_check': False, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://pypi.python.org/packages/source/%(nameletter)s/%(name)s'], 'options': {}, 'source_tmpl': 'wheel-%(version)s-py2.py3-none-any.whl', 'checksums': ['4bdcd7d840138086126cd09254dc6195fb4fc6f01c050a1d7236f2630db1d22a']}, 'easyblock': None} | |
== 2024-09-06 10:47:50,094 templates.py:231 DEBUG version found in easyconfig is 0.37.1 | |
== 2024-09-06 10:47:50,094 templates.py:333 DEBUG name: name, config: wheel | |
== 2024-09-06 10:47:50,094 templates.py:333 DEBUG name: version, config: 0.37.1 | |
== 2024-09-06 10:47:50,094 easyblock.py:809 INFO Considering directory in which easyconfig file is located when searching for wheel-0.37.1-py2.py3-none-any.whl: /home/bob/reframe | |
== 2024-09-06 10:47:50,095 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /data/apps/software/EasyBuild/4.9.2/bin/eb | |
== 2024-09-06 10:47:50,095 tools.py:288 INFO Also considering installation prefix /data/apps/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/cit-hpc-easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/fake_vsc_t401neti/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/included-easyblocks-nv_sd76y/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/reframe/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python312.zip/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/lib-dynload/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,095 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,096 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/setuptools/_vendor/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,096 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,096 tools.py:307 DEBUG Added /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-09-06 10:47:50,096 easyblock.py:851 INFO Found file wheel-0.37.1-py2.py3-none-any.whl at /data/eb/sources/r/ReFrame/extensions/wheel-0.37.1-py2.py3-none-any.whl | |
== 2024-09-06 10:47:50,096 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,096 easyblock.py:679 INFO md5 checksum for /data/eb/sources/r/ReFrame/extensions/wheel-0.37.1-py2.py3-none-any.whl: f7e1c5e641a4a0eea8379f43bceaa564 | |
== 2024-09-06 10:47:50,096 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,097 easyblock.py:679 INFO sha256 checksum for /data/eb/sources/r/ReFrame/extensions/wheel-0.37.1-py2.py3-none-any.whl: 4bdcd7d840138086126cd09254dc6195fb4fc6f01c050a1d7236f2630db1d22a | |
== 2024-09-06 10:47:50,097 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-09-06 10:47:50,097 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,097 filetools.py:1307 DEBUG Computed sha256 checksum for /data/eb/sources/r/ReFrame/extensions/wheel-0.37.1-py2.py3-none-any.whl: 4bdcd7d840138086126cd09254dc6195fb4fc6f01c050a1d7236f2630db1d22a (correct checksum: 4bdcd7d840138086126cd09254dc6195fb4fc6f01c050a1d7236f2630db1d22a) | |
== 2024-09-06 10:47:50,097 easyblock.py:685 INFO Checksum for extension source wheel-0.37.1-py2.py3-none-any.whl verified | |
== 2024-09-06 10:47:50,097 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-09-06 10:47:50,097 easyblock.py:726 DEBUG No patches found for extension wheel. | |
== 2024-09-06 10:47:50,097 templates.py:201 DEBUG config: {'name': 'reframe', 'version': '4.6.2', 'options': {'buildcmd': None, 'check_ldshared': None, 'download_dep_fail': False, 'install_src': None, 'install_target': 'install', 'pip_ignore_installed': True, 'pip_no_index': None, 'pip_verbose': None, 'req_py_majver': 3, 'req_py_minver': 6, 'max_py_majver': 3, 'max_py_minver': 11, 'sanity_pip_check': False, 'runtest': True, 'testinstall': False, 'unpack_sources': None, 'unversioned_packages': [], 'use_pip': True, 'use_pip_editable': False, 'use_pip_extras': None, 'use_pip_for_deps': False, 'use_pip_requirement': False, 'zipped_egg': False, 'source_urls': ['https://github.com/reframe-hpc/reframe/archive/'], 'options': {}, 'modulename': False, 'preinstallopts': 'export PATH=%(installdir)s/bin:$PATH && ./bootstrap.sh +docs +pygelf && cp -r external %(installdir)s && ', 'source_tmpl': 'v%(version)s.tar.gz', 'checksums': ['d3343815ee3d2c330b91a1cdb924ba184119ed7d9fc88a4a754b939a4259df82']}, 'easyblock': None} | |
== 2024-09-06 10:47:50,097 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,098 templates.py:333 DEBUG name: name, config: reframe | |
== 2024-09-06 10:47:50,098 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,098 easyblock.py:809 INFO Considering directory in which easyconfig file is located when searching for v4.6.2.tar.gz: /home/bob/reframe | |
== 2024-09-06 10:47:50,098 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /data/apps/software/EasyBuild/4.9.2/bin/eb | |
== 2024-09-06 10:47:50,098 tools.py:288 INFO Also considering installation prefix /data/apps/software/EasyBuild/4.9.2 (determined via path to 'eb' script)... | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/cit-hpc-easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/fake_vsc_t401neti/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-yp9tjf0b/included-easyblocks-nv_sd76y/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/reframe/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,098 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python312.zip/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.12/lib-dynload/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /home/bob/venvs/eb/lib/python3.12/site-packages/setuptools/_vendor/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 tools.py:303 DEBUG Checking for easybuild/easyconfigs at /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 tools.py:307 DEBUG Added /data/apps/software/EasyBuild/4.9.2/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-09-06 10:47:50,099 easyblock.py:851 INFO Found file v4.6.2.tar.gz at /data/eb/sources/r/ReFrame/extensions/v4.6.2.tar.gz | |
== 2024-09-06 10:47:50,099 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,104 easyblock.py:679 INFO md5 checksum for /data/eb/sources/r/ReFrame/extensions/v4.6.2.tar.gz: ae9128a232968a086b48f6745b216d69 | |
== 2024-09-06 10:47:50,104 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,110 easyblock.py:679 INFO sha256 checksum for /data/eb/sources/r/ReFrame/extensions/v4.6.2.tar.gz: d3343815ee3d2c330b91a1cdb924ba184119ed7d9fc88a4a754b939a4259df82 | |
== 2024-09-06 10:47:50,110 easyblock.py:682 DEBUG Verifying checksums for extension source... | |
== 2024-09-06 10:47:50,110 filetools.py:1233 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-09-06 10:47:50,116 filetools.py:1307 DEBUG Computed sha256 checksum for /data/eb/sources/r/ReFrame/extensions/v4.6.2.tar.gz: d3343815ee3d2c330b91a1cdb924ba184119ed7d9fc88a4a754b939a4259df82 (correct checksum: d3343815ee3d2c330b91a1cdb924ba184119ed7d9fc88a4a754b939a4259df82) | |
== 2024-09-06 10:47:50,116 easyblock.py:685 INFO Checksum for extension source v4.6.2.tar.gz verified | |
== 2024-09-06 10:47:50,116 easyblock.py:532 INFO Fetched extension patches: [] | |
== 2024-09-06 10:47:50,116 easyblock.py:726 DEBUG No patches found for extension reframe. | |
== 2024-09-06 10:47:50,116 easyconfig.py:2642 DEBUG Determining full module name for ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb (force_visible: False) | |
== 2024-09-06 10:47:50,116 easyconfig.py:2619 DEBUG No alternative software name specified to determine module name with | |
== 2024-09-06 10:47:50,116 utilities.py:115 DEBUG Module name ReFrame/4.6.2-Python-3.6 validated | |
== 2024-09-06 10:47:50,116 easyconfig.py:2650 DEBUG Obtained valid full module name ReFrame/4.6.2-Python-3.6 | |
== 2024-09-06 10:47:50,116 config.py:700 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /data/apps/modules | |
== 2024-09-06 10:47:50,117 easyblock.py:2446 INFO Checking dirs that need to be created: ['/data/apps/software/ReFrame/4.6.2-Python-3.6', '/data/apps/modules/all/ReFrame', '/data/apps/modules/devel/ReFrame'] | |
== 2024-09-06 10:47:50,117 filetools.py:1931 DEBUG Not creating existing path /data/apps/software/ReFrame/4.6.2-Python-3.6 | |
== 2024-09-06 10:47:50,117 filetools.py:1931 DEBUG Not creating existing path /data/apps/modules/all/ReFrame | |
== 2024-09-06 10:47:50,117 filetools.py:1931 DEBUG Not creating existing path /data/apps/modules/devel/ReFrame | |
== 2024-09-06 10:47:50,117 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-09-06 10:47:50,117 easyblock.py:3941 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-09-06 10:47:50,117 build_log.py:267 INFO creating build dir, resetting environment... | |
== 2024-09-06 10:47:50,117 easyblock.py:3950 INFO Starting ready step | |
== 2024-09-06 10:47:50,118 easyconfig.py:1702 INFO Generating template values... | |
== 2024-09-06 10:47:50,118 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,118 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,118 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,118 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,118 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,118 templates.py:333 DEBUG name: parallel, config: None | |
== 2024-09-06 10:47:50,118 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,119 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,119 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,119 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', builddir='/data/eb/build/ReFrame/4.6.2/system-system-Python-3.6', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', installdir='/data/apps/software/ReFrame/4.6.2-Python-3.6', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', start_dir='None', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,120 easyblock.py:3958 INFO Running method check_readiness_step part of step ready | |
== 2024-09-06 10:47:50,120 easyblock.py:2246 DEBUG Desired parallelism specified via 'parallel' build option: 6 | |
== 2024-09-06 10:47:50,120 easyblock.py:2255 INFO Setting parallelism: 6 | |
== 2024-09-06 10:47:50,120 modules.py:814 DEBUG Current MODULEPATH: /data/apps/modules/all:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles | |
== 2024-09-06 10:47:50,121 modules.py:828 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /home/bob/reframe | |
== 2024-09-06 10:47:50,161 modules.py:835 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: import os | |
os.environ["MODULEPATH"] = "/data/apps/modules/all:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "Yy9sbW9kL21vZHVsZXMiLCAiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMiLAp9LApzeXN0ZW1CYXNlTVBBVEggPSAiL2V0Yy9sbW9kL21vZHVsZXM6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMiLAp9Cg=="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: EasyBuild/4.9.2 | |
== 2024-09-06 10:47:50,161 modules.py:1471 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2024-09-06 10:47:50,162 easyblock.py:2307 WARNING Loaded modules detected: ['EasyBuild/4.9.2'] | |
== 2024-09-06 10:47:50,162 easyblock.py:3958 INFO Running method make_builddir part of step ready | |
== 2024-09-06 10:47:50,162 easyblock.py:1066 DEBUG Creating the build directory /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6 (cleanup: True) | |
== 2024-09-06 10:47:50,162 easyblock.py:1138 INFO Found old directory /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6 | |
== 2024-09-06 10:47:50,162 filetools.py:383 INFO Path /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6 successfully removed. | |
== 2024-09-06 10:47:50,162 easyblock.py:1146 INFO Removed old directory /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6 | |
== 2024-09-06 10:47:50,162 filetools.py:1912 INFO Creating directory /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6 (parents: True, set_gid: False, sticky: False) | |
== 2024-09-06 10:47:50,162 easyblock.py:3958 INFO Running method reset_env part of step ready | |
== 2024-09-06 10:47:50,162 easyblock.py:3958 INFO Running method handle_iterate_opts part of step ready | |
== 2024-09-06 10:47:50,163 easyconfig.py:1702 INFO Generating template values... | |
== 2024-09-06 10:47:50,163 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,163 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: parallel, config: 6 | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,163 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,163 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', builddir='/data/eb/build/ReFrame/4.6.2/system-system-Python-3.6', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', installdir='/data/apps/software/ReFrame/4.6.2-Python-3.6', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', parallel='6', start_dir='None', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,163 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-09-06 10:47:50,164 easyblock.py:3941 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-09-06 10:47:50,164 build_log.py:267 INFO unpacking... | |
== 2024-09-06 10:47:50,164 easyblock.py:3950 INFO Starting source step | |
== 2024-09-06 10:47:50,164 easyconfig.py:1702 INFO Generating template values... | |
== 2024-09-06 10:47:50,164 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,164 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: parallel, config: 6 | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,164 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,164 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', builddir='/data/eb/build/ReFrame/4.6.2/system-system-Python-3.6', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', installdir='/data/apps/software/ReFrame/4.6.2-Python-3.6', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', parallel='6', start_dir='None', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,165 easyblock.py:3958 INFO Running method checksum_step part of step source | |
== 2024-09-06 10:47:50,165 easyblock.py:3958 INFO Running method extract_step part of step source | |
== 2024-09-06 10:47:50,165 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-09-06 10:47:50,165 easyblock.py:3941 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-09-06 10:47:50,165 build_log.py:267 INFO patching... | |
== 2024-09-06 10:47:50,165 easyblock.py:3950 INFO Starting patch step | |
== 2024-09-06 10:47:50,165 easyconfig.py:1702 INFO Generating template values... | |
== 2024-09-06 10:47:50,165 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,165 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,165 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,165 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,165 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,166 templates.py:333 DEBUG name: parallel, config: 6 | |
== 2024-09-06 10:47:50,166 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,166 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,166 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,166 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', builddir='/data/eb/build/ReFrame/4.6.2/system-system-Python-3.6', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', installdir='/data/apps/software/ReFrame/4.6.2-Python-3.6', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', parallel='6', start_dir='None', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,167 easyblock.py:3958 INFO Running method patch_step part of step patch | |
== 2024-09-06 10:47:50,167 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-09-06 10:47:50,167 easyblock.py:3941 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-09-06 10:47:50,167 build_log.py:267 INFO preparing... | |
== 2024-09-06 10:47:50,167 easyblock.py:3950 INFO Starting prepare step | |
== 2024-09-06 10:47:50,167 easyconfig.py:1702 INFO Generating template values... | |
== 2024-09-06 10:47:50,167 templates.py:201 DEBUG config: ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,168 templates.py:231 DEBUG version found in easyconfig is 4.6.2 | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: name, config: ReFrame | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: parallel, config: 6 | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: version, config: 4.6.2 | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: versionsuffix, config: -Python-3.6 | |
== 2024-09-06 10:47:50,168 templates.py:333 DEBUG name: versionprefix, config: | |
== 2024-09-06 10:47:50,169 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='reframe', builddir='/data/eb/build/ReFrame/4.6.2/system-system-Python-3.6', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='reframe', installdir='/data/apps/software/ReFrame/4.6.2-Python-3.6', module_name='ReFrame/4.6.2-Python-3.6', name='ReFrame', nameletter='R', nameletterlower='r', namelower='reframe', parallel='6', start_dir='None', sysroot='', toolchain_name='system', toolchain_version='system', version='4.6.2', version_major='4', version_major_minor='4.6', version_minor='6', versionprefix='', versionsuffix='-Python-3.6' | |
== 2024-09-06 10:47:50,169 easyblock.py:3958 INFO Running method prepare_step part of step prepare | |
== 2024-09-06 10:47:50,169 easyconfig.py:2710 DEBUG Determining initial module paths for ReFrame EasyConfig @ /home/bob/reframe/ReFrame-4.6.2-Python-3.6.eb | |
== 2024-09-06 10:47:50,169 easyconfig.py:2712 DEBUG Obtained initial module paths: [] | |
== 2024-09-06 10:47:50,169 easyconfig.py:1135 DEBUG Dependencies BEFORE filtering: [] | |
== 2024-09-06 10:47:50,169 easyconfig.py:1138 DEBUG Dependencies AFTER filtering: [] | |
== 2024-09-06 10:47:50,169 toolchain.py:527 DEBUG _check_dependencies: adding toolchain dependencies [] | |
== 2024-09-06 10:47:50,169 toolchain.py:537 DEBUG _check_dependencies: MODULEPATH: /data/apps/modules/all:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles | |
== 2024-09-06 10:47:50,169 modules.py:492 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/data/apps/modules/all:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles', 'lmod', '--show-hidden')': ['ANIcalculator/1.0-GCCcore-11.3.0', 'ASE/3.22.1-gfbf-2023a', 'ATK/2.38.0-GCCcore-12.3.0', 'ATK/2.38.0-GCCcore-13.2.0', 'AUGUSTUS/3.5.0-foss-2022a', 'Abseil/20230125.2-GCCcore-11.3.0', 'Abseil/20240116.1-GCCcore-13.2.0', 'ArmForge/22.1.2', 'Armadillo/12.8.0-foss-2023b', 'Arriba/2.4.0-GCC-12.2.0', 'Arrow/16.1.0-gfbf-2023b', 'Arrow/8.0.0-foss-2022a', 'Autoconf/2.71', 'Autoconf/2.71-GCCcore-11.2.0', 'Autoconf/2.71-GCCcore-11.3.0', 'Autoconf/2.71-GCCcore-12.2.0', 'Autoconf/2.71-GCCcore-12.3.0', 'Autoconf/2.71-GCCcore-13.2.0', 'Autoconf/2.72-GCCcore-13.3.0', 'Automake/1.16.4-GCCcore-11.2.0', 'Automake/1.16.5', 'Automake/1.16.5-GCCcore-11.3.0', 'Automake/1.16.5-GCCcore-12.2.0', 'Automake/1.16.5-GCCcore-12.3.0', 'Automake/1.16.5-GCCcore-13.2.0', 'Automake/1.16.5-GCCcore-13.3.0', 'Autotools/20210726-GCCcore-11.2.0', 'Autotools/20220317', 'Autotools/20220317-GCCcore-11.3.0', 'Autotools/20220317-GCCcore-12.2.0', 'Autotools/20220317-GCCcore-12.3.0', 'Autotools/20220317-GCCcore-13.2.0', 'Autotools/20231222-GCCcore-13.3.0', 'BA3-SNPS-autotune/2.1.2-GCC-11.3.0', 'BBMap/38.98-GCC-11.2.0', 'BCFtools/1.15.1-GCC-11.3.0', 'BEDTools/2.30.0-GCC-11.2.0', 'BEDTools/2.31.0-GCC-12.3.0', 'BGEN-enkre/1.1.7-GCC-11.2.0', 'BLAST+/2.13.0-gompi-2022a', 'BLAST+/2.14.0-gompi-2022b', 'BLAST+/2.14.1-gompi-2023a', 'BLAST/2.2.26-Linux_x86_64', 'BLIS/0.8.1-GCC-11.2.0', 'BLIS/0.9.0-GCC-11.3.0', 'BLIS/0.9.0-GCC-12.2.0', 'BLIS/0.9.0-GCC-12.3.0', 'BLIS/0.9.0-GCC-13.2.0', 'BLIS/1.0-GCC-13.2.0', 'BLIS/1.0-GCC-13.3.0', 'BWA/0.7.17-GCCcore-11.3.0', 'BWA/0.7.17-GCCcore-12.2.0', 'BWA/0.7.18-GCCcore-12.3.0', 'BamTools/2.5.2-GCC-11.2.0', 'BamTools/2.5.2-GCC-11.3.0', 'BamTools/2.5.2-GCC-12.3.0', 'Bandage/0.9.0-GCCcore-11.2.0', 'Bandage/0.9.0-GCCcore-11.3.0', 'BayesAss3-SNPs/1.1-2022.02.19-GCC-11.2.0', 'BayesAss3-SNPs/1.1-GCC-11.3.0', 'Bazel/3.7.2-GCCcore-11.2.0', 'BeautifulSoup/4.10.0-GCCcore-11.3.0', 'BeautifulSoup/4.11.1-GCCcore-12.2.0', 'BeautifulSoup/4.12.2-GCCcore-12.3.0', 'BeautifulSoup/4.12.2-GCCcore-13.2.0', 'Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0', 'BioPerl/1.7.8-GCCcore-11.3.0', 'Biopython/1.79-foss-2021b', 'Biopython/1.79-foss-2022a', 'Biopython/1.83-foss-2023a', 'Bismark/0.23.1-foss-2021b', 'Bismark/0.24.0-GCC-11.3.0', 'Bison/3.0.5', 'Bison/3.3.2', 'Bison/3.5.3', 'Bison/3.7.1', 'Bison/3.7.6', 'Bison/3.7.6-GCCcore-11.2.0', 'Bison/3.8.2', 'Bison/3.8.2-GCCcore-11.3.0', 'Bison/3.8.2-GCCcore-12.2.0', 'Bison/3.8.2-GCCcore-12.3.0', 'Bison/3.8.2-GCCcore-13.2.0', 'Bison/3.8.2-GCCcore-13.3.0', 'Blender/3.2.2-linux-x64', 'Block/1.5.3-20200525-foss-2022a', 'Blosc/1.21.1-GCCcore-11.2.0', 'Blosc/1.21.3-GCCcore-11.3.0', 'Blosc/1.21.5-GCCcore-12.3.0', 'Blosc2/2.6.1-GCCcore-11.3.0', 'Blosc2/2.8.0-GCCcore-12.3.0', 'Boost.MPI/1.79.0-gompi-2022a', 'Boost.MPI/1.82.0-gompi-2023a', 'Boost.MPI/1.83.0-gompi-2023b', 'Boost.Python/1.79.0-GCC-11.3.0', 'Boost/1.55.0-GCC-11.2.0', 'Boost/1.77.0-GCC-11.2.0', 'Boost/1.79.0-GCC-11.3.0', 'Boost/1.81.0-GCC-12.2.0', 'Boost/1.81.0-intel-compilers-2022.2.1', 'Boost/1.82.0-GCC-12.3.0', 'Boost/1.83.0-GCC-13.2.0', 'Boost/1.85.0-GCC-13.3.0', 'Bottleneck/1.3.6-foss-2022a', 'Bowtie/1.3.1-GCC-11.3.0', 'Bowtie2/2.4.4-GCC-11.2.0', 'Bowtie2/2.4.5-GCC-11.3.0', 'Bracken/2.6.2-GCCcore-11.2.0', 'Brotli/1.0.9-GCCcore-11.2.0', 'Brotli/1.0.9-GCCcore-11.3.0', 'Brotli/1.0.9-GCCcore-12.2.0', 'Brotli/1.0.9-GCCcore-12.3.0', 'Brotli/1.1.0-GCCcore-13.2.0', 'Brunsli/0.1-GCCcore-12.2.0', 'Brunsli/0.1-GCCcore-12.3.0', 'Brunsli/0.1-GCCcore-13.2.0', 'CDO/2.0.5-gompi-2021b', 'CFITSIO/4.3.0-GCCcore-12.3.0', 'CFITSIO/4.3.1-GCCcore-13.2.0', 'CGAL/5.6-GCCcore-12.3.0', 'CMake/3.18.4', 'CMake/3.21.1-GCCcore-11.2.0', 'CMake/3.22.1-GCCcore-11.2.0', 'CMake/3.23.1-GCCcore-11.3.0', 'CMake/3.24.3-GCCcore-11.3.0', 'CMake/3.24.3-GCCcore-12.2.0', 'CMake/3.26.3-GCCcore-12.3.0', 'CMake/3.27.6-GCCcore-13.2.0', 'CMake/3.29.3-GCCcore-13.3.0', 'CPPE/0.3.1-GCC-11.3.0', 'CUDA/11.7.0', 'CUDA/12.4.0', 'CUnit/2.1-3-GCCcore-11.2.0', 'CUnit/2.1-3-GCCcore-11.3.0', 'Cantera/2.6.0-foss-2022a', 'CapnProto/0.10.2-GCCcore-11.3.0', 'CapnProto/0.9.1-GCCcore-11.2.0', 'CapnProto/1.0.1-GCCcore-12.3.0', 'Catch2/2.13.10-GCCcore-13.3.0', 'Catch2/2.13.9-GCCcore-12.2.0', 'Catch2/2.13.9-GCCcore-12.3.0', 'Catch2/2.13.9-GCCcore-13.2.0', 'Cereal/1.3.2', 'CharLS/2.4.1-GCCcore-11.3.0', 'CharLS/2.4.2-GCCcore-12.3.0', 'CheMPS2/1.8.12-foss-2022a', 'Check/0.15.2-GCCcore-12.2.0', 'CheckM-Database/2015_01_16', 'CheckM/1.2.2-foss-2022a', 'Clang/12.0.1-GCCcore-11.2.0', 'CoSymLib/0.10.9-foss-2022a', 'Concorde/20031219-GCC-12.3.0', 'Core/lmod', 'Core/settarg', 'CppUnit/1.15.1-GCCcore-12.2.0', 'Cython/3.0.10-GCCcore-13.2.0', 'Cython/3.0.8-GCCcore-11.3.0', 'Cython/3.0.8-GCCcore-12.3.0', 'DB/18.1.40-GCCcore-11.2.0', 'DB/18.1.40-GCCcore-11.3.0', 'DB/18.1.40-GCCcore-12.2.0', 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'nettle/3.8-GCCcore-11.3.0', 'nettle/3.9.1-GCCcore-13.2.0', 'networkx/2.6.3-foss-2021b', 'networkx/2.8.4-foss-2022a', 'networkx/3.1-gfbf-2023a', 'networkx/3.2.1-gfbf-2023b', 'nghttp2/1.48.0-GCC-11.3.0', 'nghttp3/0.6.0-GCCcore-11.3.0', 'nglview/3.1.2-foss-2023a', 'ngspice/39-foss-2022a', 'ngtcp2/0.7.0-GCC-11.3.0', 'nlohmann_json/3.10.5-GCCcore-11.3.0', 'nlohmann_json/3.11.2-GCCcore-12.3.0', 'nlohmann_json/3.11.3-GCCcore-13.2.0', 'nodejs/16.15.1-GCCcore-11.3.0', 'nodejs/18.17.1-GCCcore-12.3.0', 'nodejs/20.9.0-GCCcore-13.2.0', 'nsync/1.24.0-GCCcore-11.2.0', 'numactl/2.0.14-GCCcore-11.2.0', 'numactl/2.0.14-GCCcore-11.3.0', 'numactl/2.0.16-GCCcore-12.2.0', 'numactl/2.0.16-GCCcore-12.3.0', 'numactl/2.0.16-GCCcore-13.2.0', 'numactl/2.0.18-GCCcore-13.3.0', 'numba/0.54.1-foss-2021b', 'ont-fast5-api/4.0.2-foss-2021b', 'openslide-python/1.2.0-GCCcore-11.3.0', 'orjson/3.9.15-GCCcore-12.3.0', 'p11-kit/0.24.1-GCCcore-11.3.0', 'p7zip/17.04-GCCcore-12.3.0', 'pagmo/2.18.0-foss-2021b', 'parallel/20220722-GCCcore-11.3.0', 'parasail/2.5-GCC-11.2.0', 'patchelf/0.18.0-GCCcore-12.3.0', 'patchelf/0.18.0-GCCcore-13.2.0', 'patchelf/0.18.0-GCCcore-13.3.0', 'pauvre/0.2.3-foss-2022a', 'pauvre/0.2.3-foss-2023a', 'pftoolsV3/3.2.12-GCCcore-11.3.0', 'picard/3.0.0-Java-17', 'pigz/2.7-GCCcore-11.3.0', 'pigz/2.8-GCCcore-13.2.0', 'pixman/0.40.0-GCCcore-11.2.0', 'pixman/0.40.0-GCCcore-11.3.0', 'pixman/0.42.2-GCCcore-12.3.0', 'pixman/0.42.2-GCCcore-13.2.0', 'pkg-config/0.29.2', 'pkg-config/0.29.2-GCCcore-11.2.0', 'pkg-config/0.29.2-GCCcore-11.3.0', 'pkgconf/1.8.0', 'pkgconf/1.8.0-GCCcore-11.2.0', 'pkgconf/1.8.0-GCCcore-11.3.0', 'pkgconf/1.9.3-GCCcore-12.2.0', 'pkgconf/1.9.5-GCCcore-12.3.0', 'pkgconf/2.0.3-GCCcore-13.2.0', 'pkgconf/2.2.0-GCCcore-13.3.0', 'pkgconfig/1.5.5-GCCcore-11.2.0', 'pkgconfig/1.5.5-GCCcore-11.2.0-python', 'pkgconfig/1.5.5-GCCcore-11.3.0-python', 'pkgconfig/1.5.5-GCCcore-12.3.0-python', 'plotly.py/5.12.0-GCCcore-11.3.0', 'plotly.py/5.18.0-GCCcore-13.2.0', 'pmt/1.2.0-GCCcore-11.3.0-CUDA-11.7.0', 'pocl/1.8-GCC-11.2.0', 'poetry/1.2.2-GCCcore-11.3.0', 'poetry/1.5.1-GCCcore-12.3.0', 'poetry/1.6.1-GCCcore-13.2.0', 'poetry/1.8.3-GCCcore-13.3.0', 'popscle/0.1-beta-20210505-GCC-11.3.0', 'pplacer/1.1.alpha19', 'prodigal/2.6.3-GCCcore-11.2.0', 'prodigal/2.6.3-GCCcore-11.3.0', 'prodigal/2.6.3-GCCcore-12.3.0', 'prokka/1.14.5-gompi-2022a', 'protobuf-python/3.17.3-GCCcore-11.2.0', 'protobuf-python/3.19.4-GCCcore-11.3.0', 'protobuf/3.17.3-GCCcore-11.2.0', 'protobuf/3.19.4-GCCcore-11.3.0', 'psutil/5.9.8-GCCcore-12.3.0', 'pugixml/1.12.1-GCCcore-11.2.0', 'py-cpuinfo/9.0.0-GCCcore-11.3.0', 'py-cpuinfo/9.0.0-GCCcore-12.3.0', 'py3Dmol/2.0.1.post1-GCCcore-11.3.0', 'py3Dmol/2.1.0-GCCcore-12.3.0', 'pyBigWig/0.3.22-gfbf-2023a', 'pyGenomeTracks/3.9-foss-2023a', 'pyMBE/0.8.0-foss-2023b', 'pybedtools/0.9.1-foss-2023a', 'pybind11/2.10.3-GCCcore-12.2.0', 'pybind11/2.11.1-GCCcore-12.3.0', 'pybind11/2.11.1-GCCcore-13.2.0', 'pybind11/2.12.0-GCC-13.3.0', 'pybind11/2.7.1-GCCcore-11.2.0', 'pybind11/2.9.2-GCCcore-11.3.0', 'pydantic/1.10.13-GCCcore-12.3.0', 'pydantic/2.6.4-GCCcore-13.2.0', 'pydantic/2.7.4-GCCcore-13.2.0', 'pydicom/2.3.0-GCCcore-11.3.0', 'pyfaidx/0.7.0-GCCcore-11.2.0', 'pyfaidx/0.8.1.1-GCCcore-12.3.0', 'pygame/2.1.0-GCCcore-11.3.0', 'pygmo/2.18.0-foss-2021b', 'pyperf/2.7.0-GCCcore-12.3.0', 'pyproj/3.4.0-GCCcore-11.3.0', 'pyproj/3.6.0-GCCcore-12.3.0', 'pyslim/1.0.1-foss-2022a', 'pyspoa/0.0.8-GCC-11.2.0', 'pystencils/1.3.4-gfbf-2023b', 'pysteps/1.10.0-foss-2023a', 'python-igraph/0.9.8-foss-2021b', 'python-isal/0.11.1-GCCcore-11.2.0', 'python-isal/1.1.0-GCCcore-11.3.0', 'python-mujoco/2.2.2-foss-2022a', 'python-parasail/1.2.4-foss-2021b', 'rasterio/1.3.4-foss-2022a', 're2c/2.2-GCCcore-11.2.0', 're2c/2.2-GCCcore-11.3.0', 're2c/3.1-GCCcore-12.3.0', 'regionmask/0.9.0-foss-2022a', 'ruamel.yaml/0.17.21-GCCcore-11.3.0', 'scanpy/1.8.2-foss-2021b', 'scanpy/1.9.1-foss-2021b', 'scikit-build-core/0.5.0-GCCcore-12.3.0', 'scikit-build/0.15.0-GCCcore-11.3.0', 'scikit-build/0.17.2-GCCcore-12.2.0', 'scikit-build/0.17.6-GCCcore-12.3.0', 'scikit-build/0.17.6-GCCcore-13.2.0', 'scikit-build/0.17.6-GCCcore-13.3.0', 'scikit-image/0.19.3-foss-2022a', 'scikit-learn/1.0.1-foss-2021b', 'scikit-learn/1.1.2-foss-2022a', 'scikit-learn/1.3.1-gfbf-2023a', 'setuptools-rust/1.6.0-GCCcore-12.3.0', 'setuptools-rust/1.8.0-GCCcore-13.2.0', 'setuptools-rust/1.9.0-GCCcore-13.3.0', 'sktime/0.25.0-gfbf-2023a', 'snakemake/7.22.0-foss-2022a', 'snappy/1.1.10-GCCcore-12.3.0', 'snappy/1.1.10-GCCcore-13.2.0', 'snappy/1.1.9-GCCcore-11.2.0', 'snappy/1.1.9-GCCcore-11.3.0', 'spglib-python/2.1.0-gfbf-2023a', 'spoa/4.0.7-GCC-11.2.0', 'statsmodels/0.13.1-foss-2021b', 'statsmodels/0.13.1-foss-2022a', 'strace/5.14-GCCcore-11.2.0', 'subunit/1.4.3-GCCcore-12.2.0', 'svist4get/1.3.1-foss-2023a', 'sympy/1.10.1-foss-2022a', 'sympy/1.12-gfbf-2023b', 'sympy/1.9-foss-2021b', 'task-spooler/1.0.2-GCCcore-11.3.0', 'tbb/2020.3-GCCcore-11.2.0', 'tbb/2021.5.0-GCCcore-11.3.0', 'tbl2asn/20220427-linux64', 'tcsh/6.24.10-GCCcore-12.3.0', 'tensorboardX/2.5.1-foss-2022a', 'tesseract/5.3.0-GCCcore-11.3.0', 'time/1.9-GCCcore-12.3.0', 'tmux/3.4', 'tmux/3.4-GCCcore-13.2.0', 'tmux/3.4-GCCcore-13.3.0', 'tornado/6.3.2-GCCcore-12.3.0', 'tornado/6.4-GCCcore-13.2.0', 'tqdm/4.62.3-GCCcore-11.2.0', 'tqdm/4.64.0-GCCcore-11.3.0', 'tqdm/4.66.1-GCCcore-12.3.0', 'tqdm/4.66.2-GCCcore-13.2.0', 'typing-extensions/4.10.0-GCCcore-13.2.0', 'typing-extensions/4.9.0-GCCcore-12.3.0', 'unixODBC/2.3.12-foss-2023a', 'utf8proc/2.7.0-GCCcore-11.3.0', 'utf8proc/2.9.0-GCCcore-13.2.0', 'util-linux/2.37-GCCcore-11.2.0', 'util-linux/2.38-GCCcore-11.3.0', 'util-linux/2.38.1-GCCcore-12.2.0', 'util-linux/2.39-GCCcore-12.3.0', 'util-linux/2.39-GCCcore-13.2.0', 'vConTACT2/0.11.3-foss-2022a', 'virtualenv/20.23.1-GCCcore-12.3.0', 'virtualenv/20.24.6-GCCcore-13.2.0', 'virtualenv/20.26.2-GCCcore-13.3.0', 'vsc-mympirun/5.2.7', 'vsc-mympirun/5.2.9', 'wget/1.21.3-GCCcore-11.3.0', 'x264/20220620-GCCcore-11.3.0', 'x264/20230226-GCCcore-12.3.0', 'x264/20231019-GCCcore-13.2.0', 'x265/3.5-GCCcore-11.2.0', 'x265/3.5-GCCcore-11.3.0', 'x265/3.5-GCCcore-12.2.0', 'x265/3.5-GCCcore-12.3.0', 'x265/3.5-GCCcore-13.2.0', 'xarray/2022.6.0-foss-2022a', 'xarray/2023.9.0-gfbf-2023a', 'xorg-macros/1.19.3-GCCcore-11.2.0', 'xorg-macros/1.19.3-GCCcore-11.3.0', 'xorg-macros/1.19.3-GCCcore-12.2.0', 'xorg-macros/1.20.0-GCCcore-12.3.0', 'xorg-macros/1.20.0-GCCcore-13.2.0', 'xorg-macros/1.20.1-GCCcore-13.3.0', 'xprop/1.2.7-GCCcore-13.2.0', 'xproto/7.0.31-GCCcore-12.3.0', 'yaml-cpp/0.7.0-GCCcore-11.3.0', 'zfp/1.0.1-GCCcore-12.3.0', 'zlib-ng/2.1.6-GCCcore-12.3.0', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-11.2.0', 'zlib/1.2.12', 'zlib/1.2.12-GCCcore-11.3.0', 'zlib/1.2.12-GCCcore-12.2.0', 'zlib/1.2.13', 'zlib/1.2.13-GCCcore-12.3.0', 'zlib/1.2.13-GCCcore-13.2.0', 'zlib/1.3.1', 'zlib/1.3.1-GCCcore-13.3.0', 'zstd/1.5.0-GCCcore-11.2.0', 'zstd/1.5.2-GCCcore-11.3.0', 'zstd/1.5.2-GCCcore-12.2.0', 'zstd/1.5.5-GCCcore-12.3.0', 'zstd/1.5.5-GCCcore-13.2.0', 'zstd/1.5.6-GCCcore-13.3.0'] | |
== 2024-09-06 10:47:50,171 toolchain.py:726 INFO Loading dependencies using system toolchain... | |
== 2024-09-06 10:47:50,171 toolchain.py:680 DEBUG Loading modules for dependencies: [] | |
== 2024-09-06 10:47:50,171 modules.py:814 DEBUG Current MODULEPATH: /data/apps/modules/all:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles | |
== 2024-09-06 10:47:50,172 modules.py:828 DEBUG Running module command '/usr/share/lmod/lmod/libexec/lmod python --terse list' from /home/bob/reframe | |
== 2024-09-06 10:47:50,212 modules.py:835 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: import os | |
os.environ["MODULEPATH"] = "/data/apps/modules/all:/etc/lmod/modules:/usr/share/lmod/lmod/modulefiles"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "Yy9sbW9kL21vZHVsZXMiLCAiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMiLAp9LApzeXN0ZW1CYXNlTVBBVEggPSAiL2V0Yy9sbW9kL21vZHVsZXM6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMiLAp9Cg=="; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: EasyBuild/4.9.2 | |
== 2024-09-06 10:47:50,212 modules.py:1471 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2024-09-06 10:47:50,212 filetools.py:526 INFO Command gcc found at /usr/bin/gcc | |
== 2024-09-06 10:47:50,213 toolchain.py:275 INFO Found compiler command gcc at /usr/bin/gcc, so setting $CC in minimal build environment | |
== 2024-09-06 10:47:50,213 filetools.py:526 INFO Command g++ found at /usr/bin/g++ | |
== 2024-09-06 10:47:50,213 toolchain.py:275 INFO Found compiler command g++ at /usr/bin/g++, so setting $CXX in minimal build environment | |
== 2024-09-06 10:47:50,213 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
== 2024-09-06 10:47:50,213 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
== 2024-09-06 10:47:50,213 environment.py:93 INFO Environment variable EBROOTPYTHON set to Python (previously undefined) | |
== 2024-09-06 10:47:50,213 environment.py:93 INFO Environment variable EBVERSIONPYTHON set to 3.12.3 (previously undefined) | |
== 2024-09-06 10:47:50,213 easyblock.py:2139 INFO Using /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6/ as start dir | |
== 2024-09-06 10:47:50,213 easyblock.py:2142 DEBUG Changed to real build directory /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6/ (start_dir) | |
== 2024-09-06 10:47:50,213 filetools.py:526 INFO Command python found at /home/bob/venvs/eb/bin/python | |
== 2024-09-06 10:47:50,213 pythonpackage.py:158 DEBUG Considering Python commands: python, python3, python3.6, /home/bob/venvs/eb/bin/python3 | |
== 2024-09-06 10:47:50,214 filetools.py:526 INFO Command python found at /home/bob/venvs/eb/bin/python | |
== 2024-09-06 10:47:50,214 run.py:221 DEBUG run_cmd: running cmd python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6) | |
== 2024-09-06 10:47:50,214 run.py:247 INFO running cmd: python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' | |
== 2024-09-06 10:47:50,234 run.py:689 DEBUG cmd "python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output: | |
3.12.3 | |
== 2024-09-06 10:47:50,235 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-09-06 10:47:50,235 run.py:221 DEBUG run_cmd: running cmd python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6) | |
== 2024-09-06 10:47:50,235 run.py:247 INFO running cmd: python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' | |
== 2024-09-06 10:47:50,254 run.py:689 DEBUG cmd "python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output: | |
3.12.3 | |
== 2024-09-06 10:47:50,254 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-09-06 10:47:50,254 pythonpackage.py:142 DEBUG Python version (3.12.3) on the system is newer than the maximum supported Python version specified in the easyconfig (3.11) | |
== 2024-09-06 10:47:50,254 pythonpackage.py:172 DEBUG Python command 'python' does not satisfy version requirements (maj: 3, min: 6), moving on | |
== 2024-09-06 10:47:50,254 filetools.py:526 INFO Command python3 found at /home/bob/venvs/eb/bin/python3 | |
== 2024-09-06 10:47:50,254 run.py:221 DEBUG run_cmd: running cmd python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6) | |
== 2024-09-06 10:47:50,254 run.py:247 INFO running cmd: python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' | |
== 2024-09-06 10:47:50,272 run.py:689 DEBUG cmd "python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output: | |
3.12.3 | |
== 2024-09-06 10:47:50,272 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-09-06 10:47:50,272 run.py:221 DEBUG run_cmd: running cmd python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6) | |
== 2024-09-06 10:47:50,272 run.py:247 INFO running cmd: python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' | |
== 2024-09-06 10:47:50,288 run.py:689 DEBUG cmd "python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output: | |
3.12.3 | |
== 2024-09-06 10:47:50,288 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-09-06 10:47:50,288 pythonpackage.py:142 DEBUG Python version (3.12.3) on the system is newer than the maximum supported Python version specified in the easyconfig (3.11) | |
== 2024-09-06 10:47:50,288 pythonpackage.py:172 DEBUG Python command 'python3' does not satisfy version requirements (maj: 3, min: 6), moving on | |
== 2024-09-06 10:47:50,288 filetools.py:541 WARNING Could not find command 'python3.6' (with permissions to read/execute it) in $PATH (['/data/apps/software/EasyBuild/4.9.2/bin', '/home/bob/venvs/eb/bin', '/home/bob/.local/bin', '/home/bob/bin', '/usr/local/sbin', '/usr/local/bin', '/usr/sbin', '/usr/bin', '/sbin', '/bin', '/usr/games', '/usr/local/games', '/snap/bin', '/usr/local/go/bin']) | |
== 2024-09-06 10:47:50,288 pythonpackage.py:111 DEBUG Python command 'python3.6' not available through $PATH | |
== 2024-09-06 10:47:50,289 pythonpackage.py:172 DEBUG Python command 'python3.6' does not satisfy version requirements (maj: 3, min: 6), moving on | |
== 2024-09-06 10:47:50,289 run.py:221 DEBUG run_cmd: running cmd /home/bob/venvs/eb/bin/python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6) | |
== 2024-09-06 10:47:50,289 run.py:247 INFO running cmd: /home/bob/venvs/eb/bin/python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' | |
== 2024-09-06 10:47:50,305 run.py:689 DEBUG cmd "/home/bob/venvs/eb/bin/python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output: | |
3.12.3 | |
== 2024-09-06 10:47:50,305 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-09-06 10:47:50,305 run.py:221 DEBUG run_cmd: running cmd /home/bob/venvs/eb/bin/python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /data/eb/build/ReFrame/4.6.2/system-system-Python-3.6) | |
== 2024-09-06 10:47:50,305 run.py:247 INFO running cmd: /home/bob/venvs/eb/bin/python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' | |
== 2024-09-06 10:47:50,320 run.py:689 DEBUG cmd "/home/bob/venvs/eb/bin/python3 -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output: | |
3.12.3 | |
== 2024-09-06 10:47:50,321 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w) | |
== 2024-09-06 10:47:50,321 pythonpackage.py:142 DEBUG Python version (3.12.3) on the system is newer than the maximum supported Python version specified in the easyconfig (3.11) | |
== 2024-09-06 10:47:50,321 pythonpackage.py:172 DEBUG Python command '/home/bob/venvs/eb/bin/python3' does not satisfy version requirements (maj: 3, min: 6), moving on | |
== 2024-09-06 10:47:50,352 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/tools/build_log.py:111 in caller_info): Failed to pick Python command that satisfies requirements in the easyconfig (req_py_majver = 3, req_py_minver = 6, max_py_majver = 3, max_py_minver = 11) (at easybuild/easyblocks/generic/pythonbundle.py:121 in prepare_step) | |
== 2024-09-06 10:47:50,352 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-09-06 10:47:50,352 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /data/apps/software | |
== 2024-09-06 10:47:50,353 filetools.py:2013 INFO Removing lock /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock... | |
== 2024-09-06 10:47:50,353 filetools.py:383 INFO Path /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock successfully removed. | |
== 2024-09-06 10:47:50,353 filetools.py:2017 INFO Lock removed: /data/apps/software/.locks/_data_apps_software_ReFrame_4.6.2-Python-3.6.lock | |
== 2024-09-06 10:47:50,353 easyblock.py:4285 WARNING build failed (first 300 chars): Failed to pick Python command that satisfies requirements in the easyconfig (req_py_majver = 3, req_py_minver = 6, max_py_majver = 3, max_py_minver = 11) | |
== 2024-09-06 10:47:50,353 easyblock.py:328 INFO Closing log for application name ReFrame version 4.6.2 |
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