bbpbuildbot/GitLab logs for neuronsimulator-nrn#3205 Secret

## build-neuron-nmodl-intel-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731574269:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731574269:resolve_secrets
[0Ksection_start:1731574269:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor588672709, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484965
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484965_PROD_P2160_CP6_C6
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640233
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484965_PROD_P2160_CP6_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640233 --cpus-per-task=8 --mem=160G
section_end:1731574271:prepare_executor
[0Ksection_start:1731574271:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n31 via bbpv1.epfl.ch...
section_end:1731574275:prepare_script
[0Ksection_start:1731574275:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731574276:get_sources
[0Ksection_start:1731574276:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=249834 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731574283:restore_cache
[0Ksection_start:1731574283:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1484964)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=249965 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484964 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731574284:download_artifacts
[0Ksection_start:1731574284:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484965_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640233/ccache
Config file:        /nvme/bbpcihpcproj12/2640233/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:51:30 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (89.59%)
  Files:            10116
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts

Concretized
--------------------------------
 -   svpklaz  [email protected]=develop%[email protected]~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^[email protected]%[email protected]+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^[email protected]%[email protected]~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^[email protected]%[email protected] build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
 -   wlrxxmi      ^[email protected]=develop%[email protected]~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[+]  lui4zvp      ^[email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^[email protected]%[email protected] build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^[email protected]%[email protected] build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^[email protected]%[email protected]~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> [email protected] : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> [email protected] : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
==> Installing libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop-wlrxxmi5bv2kjljtsv4r6rdhsnvvuj25 [43/49]
==> No binary for libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop-wlrxxmi5bv2kjljtsv4r6rdhsnvvuj25 found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop-wlrxxmi5bv2kjljtsv4r6rdhsnvvuj25
  Stage: 2.73s.  Cmake: 5.48s.  Build: 1.63s.  Install: 0.11s.  Post-install: 0.10s.  Total: 10.22s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca_develop-wlrxxm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-svpklazwkxgm7w6ovkmetxh753zupkc6 [49/49]
==> No binary for neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-svpklazwkxgm7w6ovkmetxh753zupkc6 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-svpklazwkxgm7w6ovkmetxh753zupkc6
  Stage: 15.12s.  Cmake: 1m 49.90s.  Build: 11m 19.52s.  Install: 24.01s.  Post-install: 1.17s.  Total: 13m 50.46s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_oneapi-2023.2.0-skylake/neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-svpkla
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be svpklazwkxgm7w6ovkmetxh753zupkc6
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2640233/ccache
Config file:                /nvme/bbpcihpcproj12/2640233/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu Nov 14 10:08:45 2024
Cacheable calls:             1093 / 1240 (88.15%)
  Hits:                      1061 / 1093 (97.07%)
    Direct:                   392 / 1061 (36.95%)
    Preprocessed:             669 / 1061 (63.05%)
  Misses:                      32 / 1093 ( 2.93%)
Uncacheable calls:            147 / 1240 (11.85%)
  Autoconf compile/link:        5 /  147 ( 3.40%)
  Called for linking:         116 /  147 (78.91%)
  Called for preprocessing:     1 /  147 ( 0.68%)
  Compilation failed:           2 /  147 ( 1.36%)
  No input file:               23 /  147 (15.65%)
Successful lookups:
  Direct:                     392 / 1095 (35.80%)
  Preprocessed:               669 /  703 (95.16%)
Local storage:
  Cache size (GB):           0.45 / 0.51 (88.50%)
  Files:                    10088
  Cleanups:                     2
  Hits:                      1061 / 1095 (96.89%)
  Misses:                      34 / 1095 ( 3.11%)
  Reads:                     2190
  Writes:                     590
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731575327:step_script
[0Ksection_start:1731575327:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=275351 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731575352:archive_cache
[0Ksection_start:1731575352:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=275539 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484965 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=275578 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484965 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=275622 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484965 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731575354:upload_artifacts_on_success
[0Ksection_start:1731575354:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731575354:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-intel-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731574270:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731574270:resolve_secrets
[0Ksection_start:1731574270:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor313837214, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484966
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484966_PROD_P2160_CP7_C7
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640234
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484966_PROD_P2160_CP7_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640234 --cpus-per-task=8 --mem=160G
section_end:1731574271:prepare_executor
[0Ksection_start:1731574271:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i4n0 via bbpv1.epfl.ch...
section_end:1731574275:prepare_script
[0Ksection_start:1731574275:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731574276:get_sources
[0Ksection_start:1731574276:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=52202 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731574282:restore_cache
[0Ksection_start:1731574282:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1484964)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=53125 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484964 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731574283:download_artifacts
[0Ksection_start:1731574283:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484966/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484966/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484966/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484966/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484966/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484966/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484966_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640234/ccache
Config file:        /nvme/bbpcihpcproj12/2640234/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:51:34 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (90.41%)
  Files:            10192
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts

Concretized
--------------------------------
 -   jfivplw  [email protected]=develop%[email protected]~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^[email protected]%[email protected]+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^[email protected]%[email protected]~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^[email protected]%[email protected] build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
 -   wlrxxmi      ^[email protected]=develop%[email protected]~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[+]  lui4zvp      ^[email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^[email protected]%[email protected] build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^[email protected]%[email protected] build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^[email protected]%[email protected]~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> [email protected] : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> [email protected] : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca_develop-wlrxxm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-jfivplwli2eedjymn5kr2ky6qfbmpveg [49/49]
==> No binary for neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-jfivplwli2eedjymn5kr2ky6qfbmpveg found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-jfivplwli2eedjymn5kr2ky6qfbmpveg
  Stage: 11.52s.  Cmake: 1m 41.19s.  Build: 11m 9.04s.  Install: 22.97s.  Post-install: 1.16s.  Total: 13m 26.72s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_oneapi-2023.2.0-skylake/neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-jfivpl
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be jfivplwli2eedjymn5kr2ky6qfbmpveg
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2640234/ccache
Config file:                /nvme/bbpcihpcproj12/2640234/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu Nov 14 10:08:18 2024
Cacheable calls:             1071 / 1198 (89.40%)
  Hits:                      1039 / 1071 (97.01%)
    Direct:                   370 / 1039 (35.61%)
    Preprocessed:             669 / 1039 (64.39%)
  Misses:                      32 / 1071 ( 2.99%)
Uncacheable calls:            127 / 1198 (10.60%)
  Autoconf compile/link:        5 /  127 ( 3.94%)
  Called for linking:         107 /  127 (84.25%)
  Called for preprocessing:     1 /  127 ( 0.79%)
  Compilation failed:           2 /  127 ( 1.57%)
  No input file:               12 /  127 ( 9.45%)
Successful lookups:
  Direct:                     370 / 1073 (34.48%)
  Preprocessed:               669 /  703 (95.16%)
Local storage:
  Cache size (GB):           0.46 / 0.51 (90.56%)
  Files:                    10299
  Cleanups:                     3
  Hits:                      1039 / 1073 (96.83%)
  Misses:                      34 / 1073 ( 3.17%)
  Reads:                     2146
  Writes:                     590
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731575301:step_script
[0Ksection_start:1731575301:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=84339 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731575325:archive_cache
[0Ksection_start:1731575325:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=84479 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484966 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=84521 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484966 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=84563 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484966 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731575326:upload_artifacts_on_success
[0Ksection_start:1731575326:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731575327:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731574271:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731574271:resolve_secrets
[0Ksection_start:1731574271:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor139436611, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484967
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484967_PROD_P2160_CP8_C8
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640235
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484967_PROD_P2160_CP8_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640235 --cpus-per-task=8 --mem=160G
section_end:1731574272:prepare_executor
[0Ksection_start:1731574272:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i6n26 via bbpv1.epfl.ch...
section_end:1731574274:prepare_script
[0Ksection_start:1731574274:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731574275:get_sources
[0Ksection_start:1731574275:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=9448 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731574281:restore_cache
[0Ksection_start:1731574281:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1484964)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=9866 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484964 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731574282:download_artifacts
[0Ksection_start:1731574282:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484967/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484967/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484967/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484967/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484967/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484967/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484967_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640235/ccache
Config file:        /nvme/bbpcihpcproj12/2640235/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:51:27 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (90.73%)
  Files:            11683
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts

Concretized
--------------------------------
 -   fe6x5rk  [email protected]=develop%[email protected]~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^[email protected]%[email protected]+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^[email protected]%[email protected]~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^[email protected]%[email protected]~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^[email protected]%[email protected] build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
 -   tz3fxvb      ^[email protected]=develop%[email protected]~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[+]  lui4zvp      ^[email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^[email protected]%[email protected] build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^[email protected]%[email protected] build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^[email protected]%[email protected]~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> [email protected] : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> [email protected] : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop-tz3fxvbaiiukzdxyc6zhwxeagg7xqfii [41/50]
==> No binary for libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop-tz3fxvbaiiukzdxyc6zhwxeagg7xqfii found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop-tz3fxvbaiiukzdxyc6zhwxeagg7xqfii
  Stage: 1.61s.  Cmake: 4.72s.  Build: 1.27s.  Install: 0.10s.  Post-install: 0.11s.  Total: 8.05s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca_develop-tz3fxv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
==> Installing neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-fe6x5rkfw7bofbq5eqdxd7l5dbu3vkac [50/50]
==> No binary for neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-fe6x5rkfw7bofbq5eqdxd7l5dbu3vkac found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-fe6x5rkfw7bofbq5eqdxd7l5dbu3vkac
  Stage: 18.43s.  Cmake: 1m 50.83s.  Build: 37m 45.19s.  Install: 31.54s.  Post-install: 7.74s.  Total: 40m 36.70s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-fe6x5r
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be fe6x5rkfw7bofbq5eqdxd7l5dbu3vkac
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2640235/ccache
Config file:                /nvme/bbpcihpcproj12/2640235/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu Nov 14 10:35:43 2024
Cacheable calls:             1089 / 1214 (89.70%)
  Hits:                      1057 / 1089 (97.06%)
    Direct:                   387 / 1057 (36.61%)
    Preprocessed:             670 / 1057 (63.39%)
  Misses:                      32 / 1089 ( 2.94%)
Uncacheable calls:            125 / 1214 (10.30%)
  Autoconf compile/link:        5 /  125 ( 4.00%)
  Called for linking:          99 /  125 (79.20%)
  Called for preprocessing:     2 /  125 ( 1.60%)
  Compilation failed:           2 /  125 ( 1.60%)
  No input file:               16 /  125 (12.80%)
  Preprocessing failed:         1 /  125 ( 0.80%)
Successful lookups:
  Direct:                     387 / 1092 (35.44%)
  Preprocessed:               670 /  704 (95.17%)
Local storage:
  Cache size (GB):           0.47 / 0.51 (92.07%)
  Files:                    11932
  Hits:                      1057 / 1091 (96.88%)
  Misses:                      34 / 1091 ( 3.12%)
  Reads:                     2183
  Writes:                     591
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731576945:step_script
[0Ksection_start:1731576945:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=64497 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731576969:archive_cache
[0Ksection_start:1731576969:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=64774 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484967 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=64814 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484967 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=64857 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484967 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731576971:upload_artifacts_on_success
[0Ksection_start:1731576971:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731576972:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731574271:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731574271:resolve_secrets
[0Ksection_start:1731574271:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor519177117, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484968
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484968_PROD_P2160_CP9_C9
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640236
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484968_PROD_P2160_CP9_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640236 --cpus-per-task=8 --mem=160G
section_end:1731574274:prepare_executor
[0Ksection_start:1731574274:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i6n26 via bbpv1.epfl.ch...
section_end:1731574278:prepare_script
[0Ksection_start:1731574278:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731574279:get_sources
[0Ksection_start:1731574279:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=9761 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731574284:restore_cache
[0Ksection_start:1731574284:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1484964)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=10415 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484964 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731574285:download_artifacts
[0Ksection_start:1731574285:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484968/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484968/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484968/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484968/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484968/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484968/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484968_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640236/ccache
Config file:        /nvme/bbpcihpcproj12/2640236/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:51:30 2024
Local storage:
  Cache size (GB):   0.47 / 0.51 (90.89%)
  Files:            11752
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts

Concretized
--------------------------------
 -   5spz2hn  [email protected]=develop%[email protected]~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^[email protected]%[email protected]+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^[email protected]%[email protected]~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^[email protected]%[email protected]~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^[email protected]%[email protected] build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
 -   tz3fxvb      ^[email protected]=develop%[email protected]~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[+]  lui4zvp      ^[email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^[email protected]%[email protected] build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^[email protected]%[email protected] build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^[email protected]%[email protected]~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> [email protected] : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> [email protected] : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca_develop-tz3fxv
==> Installing neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-5spz2hntsgv4xhtw24ls2weihreasveb [50/50]
==> No binary for neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-5spz2hntsgv4xhtw24ls2weihreasveb found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-5spz2hntsgv4xhtw24ls2weihreasveb
  Stage: 16.24s.  Cmake: 1m 55.39s.  Build: 38m 25.32s.  Install: 22.19s.  Post-install: 1.15s.  Total: 41m 0.79s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-5spz2h
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 5spz2hntsgv4xhtw24ls2weihreasveb
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2640236/ccache
Config file:                /nvme/bbpcihpcproj12/2640236/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu Nov 14 10:35:59 2024
Cacheable calls:             1069 / 1184 (90.29%)
  Hits:                      1037 / 1069 (97.01%)
    Direct:                   367 / 1037 (35.39%)
    Preprocessed:             670 / 1037 (64.61%)
  Misses:                      32 / 1069 ( 2.99%)
Uncacheable calls:            115 / 1184 ( 9.71%)
  Autoconf compile/link:        5 /  115 ( 4.35%)
  Called for linking:          97 /  115 (84.35%)
  Called for preprocessing:     2 /  115 ( 1.74%)
  Compilation failed:           2 /  115 ( 1.74%)
  No input file:                8 /  115 ( 6.96%)
  Preprocessing failed:         1 /  115 ( 0.87%)
Successful lookups:
  Direct:                     367 / 1072 (34.24%)
  Preprocessed:               670 /  704 (95.17%)
Local storage:
  Cache size (GB):           0.47 / 0.51 (92.23%)
  Files:                    12001
  Hits:                      1037 / 1071 (96.83%)
  Misses:                      34 / 1071 ( 3.17%)
  Reads:                     2143
  Writes:                     591
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731576961:step_script
[0Ksection_start:1731576961:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=64626 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731576985:archive_cache
[0Ksection_start:1731576985:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=65220 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484968 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=65258 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484968 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=65297 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484968 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731576987:upload_artifacts_on_success
[0Ksection_start:1731576987:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731576988:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731574272:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731574272:resolve_secrets
[0Ksection_start:1731574272:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3561848167, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484969
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484969_PROD_P2160_CP10_C10
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640237
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484969_PROD_P2160_CP10_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640237 --cpus-per-task=8 --mem=160G
section_end:1731574274:prepare_executor
[0Ksection_start:1731574274:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i6n27 via bbpv1.epfl.ch...
section_end:1731574278:prepare_script
[0Ksection_start:1731574278:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731574279:get_sources
[0Ksection_start:1731574279:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16775 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731574285:restore_cache
[0Ksection_start:1731574285:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1484964)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16908 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484964 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731574286:download_artifacts
[0Ksection_start:1731574286:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484969/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484969/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484969/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484969/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484969/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484969/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484969_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640237/ccache
Config file:        /nvme/bbpcihpcproj12/2640237/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:51:32 2024
Local storage:
  Cache size (GB):   0.47 / 0.51 (91.39%)
  Files:            11986
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   z573u67  [email protected]=develop%[email protected]~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^[email protected]%[email protected]+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^[email protected]%[email protected]~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
 -   vjj3tpl      ^[email protected]%[email protected]+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^]  hficqq7          ^[email protected]%[email protected]~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^[email protected]%[email protected]~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^[email protected]%[email protected]+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^[email protected]%[email protected]~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^[email protected]%[email protected]~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^[email protected]%[email protected]~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^[email protected]%[email protected] build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
 -   tz3fxvb      ^[email protected]=develop%[email protected]~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[+]  lui4zvp      ^[email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^[email protected]%[email protected] build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^[email protected]%[email protected] build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^[email protected]%[email protected]~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> [email protected] : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://mirror.spack.io/_source-cache/archive/b8/b86b733cbb73495d5f3fe06e6a9885ec77365c8aa9195e7654581180adc2217c.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
  Stage: 0.80s.  Cmake: 9.42s.  Build: 7.65s.  Install: 0.94s.  Post-install: 0.18s.  Total: 19.37s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca_develop-tz3fxv
==> Installing neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-z573u67l4qi3jdifzzamcax7mv4mocot [55/55]
==> No binary for neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-z573u67l4qi3jdifzzamcax7mv4mocot found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-z573u67l4qi3jdifzzamcax7mv4mocot
  Stage: 14.52s.  Cmake: 1m 51.16s.  Build: 40m 7.13s.  Install: 37.42s.  Post-install: 3.19s.  Total: 42m 55.58s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-z573u6
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be z573u67l4qi3jdifzzamcax7mv4mocot
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2640237/ccache
Config file:                /nvme/bbpcihpcproj12/2640237/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu Nov 14 10:38:29 2024
Cacheable calls:             1232 / 1371 (89.86%)
  Hits:                      1195 / 1232 (97.00%)
    Direct:                   525 / 1195 (43.93%)
    Preprocessed:             670 / 1195 (56.07%)
  Misses:                      37 / 1232 ( 3.00%)
Uncacheable calls:            139 / 1371 (10.14%)
  Autoconf compile/link:        5 /  139 ( 3.60%)
  Called for linking:         105 /  139 (75.54%)
  Called for preprocessing:     4 /  139 ( 2.88%)
  Compilation failed:           2 /  139 ( 1.44%)
  No input file:               22 /  139 (15.83%)
  Preprocessing failed:         1 /  139 ( 0.72%)
Successful lookups:
  Direct:                     525 / 1231 (42.65%)
  Preprocessed:               670 /  705 (95.04%)
Local storage:
  Cache size (GB):           0.47 / 0.51 (92.74%)
  Files:                    12240
  Hits:                      1195 / 1230 (97.15%)
  Misses:                      35 / 1230 ( 2.85%)
  Reads:                     2460
  Writes:                     592
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731577112:step_script
[0Ksection_start:1731577112:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=71598 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731577136:archive_cache
[0Ksection_start:1731577136:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=71846 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484969 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=71883 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484969 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=71926 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484969 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731577138:upload_artifacts_on_success
[0Ksection_start:1731577138:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731577138:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731574272:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731574272:resolve_secrets
[0Ksection_start:1731574272:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1764875368, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484970
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484970_PROD_P2160_CP11_C11
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640238
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484970_PROD_P2160_CP11_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640238 --cpus-per-task=8 --mem=160G
section_end:1731574274:prepare_executor
[0Ksection_start:1731574274:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i6n27 via bbpv1.epfl.ch...
section_end:1731574278:prepare_script
[0Ksection_start:1731574278:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731574279:get_sources
[0Ksection_start:1731574279:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16743 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731574285:restore_cache
[0Ksection_start:1731574285:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1484964)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=16983 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484964 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731574286:download_artifacts
[0Ksection_start:1731574286:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484970/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484970/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484970/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484970/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484970/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484970/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484970_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640238/ccache
Config file:        /nvme/bbpcihpcproj12/2640238/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:51:32 2024
Local storage:
  Cache size (GB):   0.48 / 0.51 (93.46%)
  Files:            12406
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/lui4zvpwg3ize7xfxuvuljr3hbqwymts
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   na56fzk  [email protected]=develop%[email protected]~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^[email protected]%[email protected]+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^[email protected]%[email protected]+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^[email protected]%[email protected]+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^[email protected]%[email protected]~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
 -   vjj3tpl      ^[email protected]%[email protected]+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^]  hficqq7          ^[email protected]%[email protected]~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^[email protected]%[email protected]~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^[email protected]%[email protected]+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^[email protected]%[email protected]~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^[email protected]%[email protected]~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^[email protected]%[email protected]~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^[email protected]%[email protected]+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^[email protected]%[email protected]~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^[email protected]%[email protected] build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^[email protected]%[email protected]+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^[email protected]%[email protected] build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^[email protected]%[email protected] build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^[email protected]%[email protected]~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
 -   tz3fxvb      ^[email protected]=develop%[email protected]~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^[email protected]%[email protected]+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^[email protected]%[email protected]~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[+]  lui4zvp      ^[email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^[email protected]%[email protected] build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^[email protected]%[email protected] build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^[email protected]%[email protected]~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^[email protected]%[email protected] build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> [email protected] : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/libsonata-report-git.b42e72121c5c299188601f914da0c3f3d0f196ca_develop-tz3fxv
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-na56fzkf3ie6lylatrruwqf2qjvykyuf [55/55]
==> No binary for neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-na56fzkf3ie6lylatrruwqf2qjvykyuf found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop-na56fzkf3ie6lylatrruwqf2qjvykyuf
  Stage: 12.30s.  Cmake: 2m 20.85s.  Build: 40m 12.52s.  Install: 21.46s.  Post-install: 1.25s.  Total: 43m 8.94s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_nvhpc-23.1-skylake/neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-na56fz
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be na56fzkf3ie6lylatrruwqf2qjvykyuf
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:            /nvme/bbpcihpcproj12/2640238/ccache
Config file:                /nvme/bbpcihpcproj12/2640238/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Thu Nov 14 10:38:36 2024
Cacheable calls:             1075 / 1183 (90.87%)
  Hits:                      1039 / 1075 (96.65%)
    Direct:                   369 / 1039 (35.51%)
    Preprocessed:             670 / 1039 (64.49%)
  Misses:                      36 / 1075 ( 3.35%)
Uncacheable calls:            108 / 1183 ( 9.13%)
  Autoconf compile/link:        5 /  108 ( 4.63%)
  Called for linking:          90 /  108 (83.33%)
  Called for preprocessing:     2 /  108 ( 1.85%)
  Compilation failed:           2 /  108 ( 1.85%)
  No input file:                8 /  108 ( 7.41%)
  Preprocessing failed:         1 /  108 ( 0.93%)
Successful lookups:
  Direct:                     369 / 1074 (34.36%)
  Preprocessed:               670 /  704 (95.17%)
Local storage:
  Cache size (GB):           0.48 / 0.51 (93.49%)
  Files:                    12484
  Cleanups:                     2
  Hits:                      1039 / 1073 (96.83%)
  Misses:                      34 / 1073 ( 3.17%)
  Reads:                     2147
  Writes:                     591
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731577119:step_script
[0Ksection_start:1731577119:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=71717 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731577142:archive_cache
[0Ksection_start:1731577142:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=72289 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484970 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=72329 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484970 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=72370 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484970 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731577144:upload_artifacts_on_success
[0Ksection_start:1731577144:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731577145:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-nmodl.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731573924:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731573924:resolve_secrets
[0Ksection_start:1731573924:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1839914049, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484964
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484964_PROD_P2160_CP6_C6
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640226
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1484964_PROD_P2160_CP6_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=2 --jobid=2640226 --cpus-per-task=8 --mem=160G
section_end:1731573926:prepare_executor
[0Ksection_start:1731573926:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n31 via bbpv1.epfl.ch...
section_end:1731573929:prepare_script
[0Ksection_start:1731573929:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731573930:get_sources
[0Ksection_start:1731573930:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=244845 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731573936:restore_cache
[0Ksection_start:1731573936:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for spack_setup (1484963)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=244960 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484963 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731573937:download_artifacts
[0Ksection_start:1731573937:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484964/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484964/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484964/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484964/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484964/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484964/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484964_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install nmodl%gcc ~legacy-unit
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:    /nvme/bbpcihpcproj12/2640226/ccache
Config file:        /nvme/bbpcihpcproj12/2640226/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Thu Nov 14 09:45:42 2024
Local storage:
  Cache size (GB):  0.45 / 0.51 (87.81%)
  Files:            8949
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   lui4zvp  [email protected]=develop%[email protected]~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e]  yn5fbwg      ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  pywly2v      ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  swjylul          ^[email protected]%[email protected]~guile build_system=generic arch=linux-rhel7-skylake
[^]  ud3echq      ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e]  b5zzpr3      ^[email protected]%[email protected]~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^[email protected]%[email protected]+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  evtttrh      ^[email protected]%[email protected]~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e]  omn6mm4      ^[email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake
[^]  teske2k      ^[email protected]%[email protected]~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  p3xbqxj          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  aj3rk42          ^[email protected]%[email protected] build_system=generic arch=linux-rhel7-skylake
[^]  7validy      ^[email protected]%[email protected]~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo      ^[email protected]%[email protected]~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt      ^[email protected]%[email protected]+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz          ^[email protected]%[email protected] build_system=autotools arch=linux-rhel7-skylake
[^]  t5tovex      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv              ^[email protected]%[email protected]+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk                  ^[email protected]%[email protected]+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  uqml2to                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu                      ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  xwl5l6q                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek                  ^[email protected]%[email protected] build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^[email protected]%[email protected]+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  ihotvbs      ^[email protected]%[email protected]+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433, but it is owned by 0
==> [email protected] : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> [email protected] : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> [email protected] : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> [email protected] : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> [email protected] : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
==> Installing nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075=develop-lui4zvpwg3ize7xfxuvuljr3hbqwymts [19/19]
==> No binary for nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075=develop-lui4zvpwg3ize7xfxuvuljr3hbqwymts found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075=develop-lui4zvpwg3ize7xfxuvuljr3hbqwymts
  Stage: 51.45s.  Cmake: 2.53s.  Build: 1m 30.34s.  Install: 0.16s.  Post-install: 0.13s.  Total: 2m 24.88s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/software/install_gcc-12.3.0-skylake/nmodl-git.16b5f956c3a1bea0a9234b31be74cd86c471f075_develop-lui4zv
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be lui4zvpwg3ize7xfxuvuljr3hbqwymts
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Cache directory:      /nvme/bbpcihpcproj12/2640226/ccache
Config file:          /nvme/bbpcihpcproj12/2640226/ccache/ccache.conf
System config file:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:        Thu Nov 14 09:50:39 2024
Cacheable calls:       145 /  172 (84.30%)
  Hits:                143 /  145 (98.62%)
    Direct:             28 /  143 (19.58%)
    Preprocessed:      115 /  143 (80.42%)
  Misses:                2 /  145 ( 1.38%)
Uncacheable calls:      27 /  172 (15.70%)
  Called for linking:   24 /   27 (88.89%)
  No input file:         3 /   27 (11.11%)
Successful lookups:
  Direct:               28 /  145 (19.31%)
  Preprocessed:        115 /  117 (98.29%)
Local storage:
  Cache size (GB):    0.45 / 0.51 (87.82%)
  Files:              8953
  Hits:                143 /  145 (98.62%)
  Misses:                2 /  145 ( 1.38%)
  Reads:               290
  Writes:                4
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1731574241:step_script
[0Ksection_start:1731574241:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=248838 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1731574265:archive_cache
[0Ksection_start:1731574265:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=249022 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484964 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=249065 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1484964 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=249107 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484964 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731574267:upload_artifacts_on_success
[0Ksection_start:1731574267:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731574267:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## GitLab logs for neuronsimulator-nrn#3205
!

## mac-m1-cmake-build-cmake-on-off-off-address.txt
[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m
[0K  on macos-arm64 vGzz-bdp[0;m
section_start:1731573818:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731573818:resolve_secrets
[0Ksection_start:1731573818:prepare_executor
[0K[0K[36;1mPreparing the "shell" executor[0;m[0;m
[0KUsing Shell executor...[0;m
section_end:1731573818:prepare_executor
[0Ksection_start:1731573818:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1731573818:prepare_script
[0Ksection_start:1731573818:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out 49117072 as 1uc/modernize-decref-2...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731573820:get_sources
[0Ksection_start:1731573820:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-1uc/modernize-decref-2-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=arm64 os[0;m=darwin pid[0;m=41699 revision[0;m=43b2dc3d version[0;m=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1731573820:restore_cache
[0Ksection_start:1731573820:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ real_python=$(python3 resolve_shim.py)[0;m
[32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/[email protected]/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
[32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m
[32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp60yqaff5
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp60yqaff5/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp60yqaff5/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
[32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
 * branch            49fdfe6c123f452c07e0dc69fbacc5ce66ea637d -> FETCH_HEAD
Submodule path 'external/nmodl': checked out '49fdfe6c123f452c07e0dc69fbacc5ce66ea637d'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/dlfcn-win32' (https://github.com/dlfcn-win32/dlfcn-win32) registered for path 'external/nmodl/ext/dlfcn-win32'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/dlfcn-win32'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
 * branch            f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
 * branch            8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
 * branch            f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
Submodule path 'external/nmodl/ext/dlfcn-win32': checked out '048bff80f2bd00bb651bcc3357cb6f76e3d76fd5'
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
 * branch            0c9fce2ffefecfdce794e1859584e25877b7b592 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out '0c9fce2ffefecfdce794e1859584e25877b7b592'
From https://github.com/nlohmann/json
 * branch            9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
 * branch            3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b'
From https://github.com/gabime/spdlog
 * branch            7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
[32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m
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Using cached types_python_dateutil-2.9.0.20241003-py3-none-any.whl (9.7 kB)
Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, bleach, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scipy, scikit-build-core, rfc3339-validator, requests, referencing, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter
Successfully installed Jinja2-3.1.4 MarkupSafe-3.0.2 PyYAML-6.0.2 alabaster-0.7.16 anyio-4.6.2.post1 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-24.2.0 babel-2.16.0 beautifulsoup4-4.12.3 bleach-6.2.0 certifi-2024.8.30 cffi-1.17.1 charset-normalizer-3.4.0 comm-0.2.2 coverage-7.6.4 debugpy-1.8.8 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.2 executing-2.1.0 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.6 httpx-0.27.2 idna-3.10 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.5 ipython-8.29.0 ipywidgets-8.1.5 isoduration-20.11.0 jedi-0.19.2 json5-0.9.28 jsonpointer-3.0.0 jsonschema-4.23.0 jsonschema-specifications-2024.10.1 jupyter-1.1.1 jupyter-client-8.6.3 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.2 jupyter-server-terminals-0.5.3 jupyterlab-4.2.5 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.3 jupyterlab-widgets-3.0.13 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.5 nest-asyncio-1.6.0 notebook-7.2.2 notebook-shim-0.2.4 numpy-2.1.3 overrides-7.7.0 packaging-24.2 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.3.6 pluggy-1.5.0 prometheus-client-0.21.0 prompt-toolkit-3.0.48 psutil-6.1.0 ptyprocess-0.7.0 pure-eval-0.2.3 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-6.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.2.0 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.21.0 scikit-build-core-0.10.7 scipy-1.14.1 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.6 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-2.0.0 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-2.0.0 sphinxcontrib-serializinghtml-2.0.0 stack-data-0.6.3 sympy-1.13.3 terminado-0.18.1 tinycss2-1.4.0 tomli-2.1.0 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20241003 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.3 wcwidth-0.2.13 webcolors-24.11.1 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.13

[notice] A new release of pip is available: 23.3.1 -> 24.3.1
[notice] To update, run: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip
[32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
  Using cached pip-24.3.1-py3-none-any.whl.metadata (3.7 kB)
Collecting wheel (from -r nrn_requirements.txt (line 1))
  Using cached wheel-0.45.0-py3-none-any.whl.metadata (2.3 kB)
Requirement already satisfied: setuptools_scm in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (8.1.0)
Requirement already satisfied: setuptools<=70.3.0 in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 3)) (68.2.2)
Collecting setuptools<=70.3.0 (from -r nrn_requirements.txt (line 3))
  Using cached setuptools-70.3.0-py3-none-any.whl.metadata (5.8 kB)
Collecting scikit-build (from -r nrn_requirements.txt (line 4))
  Using cached scikit_build-0.18.1-py3-none-any.whl.metadata (18 kB)
Collecting matplotlib (from -r nrn_requirements.txt (line 5))
  Using cached matplotlib-3.9.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB)
Requirement already satisfied: ipython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 6)) (8.29.0)
Collecting cython (from -r nrn_requirements.txt (line 7))
  Using cached Cython-3.0.11-py2.py3-none-any.whl.metadata (3.2 kB)
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 8)) (24.2)
Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 9)) (8.1.1)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 10)) (6.0.0)
Collecting mpi4py<4 (from -r nrn_requirements.txt (line 11))
  Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 12)) (2.1.3)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 13)) (0.4.0)
Requirement already satisfied: tomli>=1 in ./venv/lib/python3.10/site-packages (from setuptools_scm->-r nrn_requirements.txt (line 2)) (2.1.0)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
  Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached contourpy-1.3.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.4 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached fonttools-4.54.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (163 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached kiwisolver-1.4.7-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.3 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached pillow-11.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.1 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached pyparsing-3.2.0-py3-none-any.whl.metadata (5.0 kB)
Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.10/site-packages (from matplotlib->-r nrn_requirements.txt (line 5)) (2.9.0.post0)
Requirement already satisfied: decorator in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (5.1.1)
Requirement already satisfied: jedi>=0.16 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (0.19.2)
Requirement already satisfied: matplotlib-inline in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (0.1.7)
Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.41 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (3.0.48)
Requirement already satisfied: pygments>=2.4.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (2.18.0)
Requirement already satisfied: stack-data in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (0.6.3)
Requirement already satisfied: traitlets>=5.13.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (5.14.3)
Requirement already satisfied: exceptiongroup in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (1.2.2)
Requirement already satisfied: typing-extensions>=4.6 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (4.12.2)
Requirement already satisfied: pexpect>4.3 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 6)) (4.9.0)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 9)) (2.0.0)
Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 9)) (1.5.0)
Requirement already satisfied: coverage>=7.5 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=7.5->pytest-cov->-r nrn_requirements.txt (line 10)) (7.6.4)
Requirement already satisfied: parso<0.9.0,>=0.8.4 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 6)) (0.8.4)
Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 6)) (0.7.0)
Requirement already satisfied: wcwidth in ./venv/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 6)) (0.2.13)
Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) (1.16.0)
Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 6)) (2.1.0)
Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 6)) (2.4.1)
Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 6)) (0.2.3)
Using cached pip-24.3.1-py3-none-any.whl (1.8 MB)
Using cached wheel-0.45.0-py3-none-any.whl (72 kB)
Using cached setuptools-70.3.0-py3-none-any.whl (931 kB)
Using cached scikit_build-0.18.1-py3-none-any.whl (85 kB)
Using cached matplotlib-3.9.2-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB)
Using cached Cython-3.0.11-py2.py3-none-any.whl (1.2 MB)
Using cached contourpy-1.3.1-cp310-cp310-macosx_11_0_arm64.whl (253 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.54.1-cp310-cp310-macosx_11_0_arm64.whl (2.3 MB)
Using cached kiwisolver-1.4.7-cp310-cp310-macosx_11_0_arm64.whl (64 kB)
Using cached pillow-11.0.0-cp310-cp310-macosx_11_0_arm64.whl (3.0 MB)
Using cached pyparsing-3.2.0-py3-none-any.whl (106 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, mpi4py, kiwisolver, fonttools, distro, cython, cycler, contourpy, scikit-build, matplotlib
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.2.2
    Uninstalling setuptools-68.2.2:
      Successfully uninstalled setuptools-68.2.2
  Attempting uninstall: pip
    Found existing installation: pip 23.3.1
    Uninstalling pip-23.3.1:
      Successfully uninstalled pip-23.3.1
Successfully installed contourpy-1.3.1 cycler-0.12.1 cython-3.0.11 distro-1.9.0 fonttools-4.54.1 kiwisolver-1.4.7 matplotlib-3.9.2 mpi4py-3.1.6 pillow-11.0.0 pip-24.3.1 pyparsing-3.2.0 scikit-build-0.18.1 setuptools-70.3.0 wheel-0.45.0
[32;1m$ source ./venv/bin/activate[0;m
[32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m
[32;1m$ ${PYTHON} --version[0;m
Python 3.10.13
[32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m
[32;1m$ export CXX=${CXX:-g++}[0;m
[32;1m$ export CC=${CC:-gcc}[0;m
[32;1m$ brew install flex bison[0;m
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
  brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
  brew reinstall bison
[32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m
[32;1m$ export INSTALL_DIR=$(pwd)/install[0;m
[32;1m$ echo $LANG[0;m

[32;1m$ echo $LC_ALL[0;m

[32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m
[32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m
[32;1m$ cmake_args=(-G Ninja)[0;m
[32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m
[32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m
[32;1m$ fi[0;m
[32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m
[32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m
[32;1m$ mkdir build && cd build[0;m
[32;1m$ echo "Building with ${cmake_args[@]}"[0;m
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python
[32;1m$ cmake .. "${cmake_args[@]}"[0;m
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update  --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Sub-module : missing /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/fmt : running git submodule update  --init
Submodule 'external/fmt' (https://github.com/fmtlib/fmt) registered for path 'external/fmt'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/fmt'...
Submodule path 'external/fmt': checked out '0c9fce2ffefecfdce794e1859584e25877b7b592'
-- {fmt} version: 11.0.2
-- Build type: Custom
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Sub-module : missing /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nanobind : running git submodule update --recursive;--depth;1 --init
Submodule 'external/nanobind' (https://github.com/wjakob/nanobind) registered for path 'external/nanobind'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nanobind'...
From https://github.com/wjakob/nanobind
 * branch            8d7f1ee0621c17fa370b704b2100ffa0243d5bfb -> FETCH_HEAD
Submodule path 'external/nanobind': checked out '8d7f1ee0621c17fa370b704b2100ffa0243d5bfb'
Submodule 'ext/robin_map' (https://github.com/Tessil/robin-map) registered for path 'external/nanobind/ext/robin_map'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nanobind/ext/robin_map'...
From https://github.com/Tessil/robin-map
 * branch            188c45569cc2a5dd768077c193830b51d33a5020 -> FETCH_HEAD
Submodule path 'external/nanobind/ext/robin_map': checked out '188c45569cc2a5dd768077c193830b51d33a5020'
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.12.0
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6")
-- Found PythonLibs: /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found Python: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter
--
-- Configured NMODL 0.0 (49fdfe6 2024-11-07 12:57:34 +0000)
--
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd
-- Build Type          | Custom
-- Python Bindings     | OFF
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python
--   Linked against    | ON
-- --------------------+--------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
-- Building CoreNEURON
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP              | OFF
-- NMODL PATH          | /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         |
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Extracting link flags from target 'fmt::fmt', beware that this can be fragile. Got:
For 'nrnpython' going to see TARGET 'fmt::fmt' recursively.
Extracting link flags from target 'fmt::fmt', beware that this can be fragile. Got:  /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;fmt::fmt;nanobind
For 'nrnpython' going to see TARGET 'nanobind' recursively.
Extracting link flags from target 'nanobind', beware that this can be fragile. Got:  /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;fmt::fmt;nanobind
Extracting link flags from target 'nrnpython', beware that this can be fragile. Got:  /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;fmt::fmt;nanobind
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:  /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;fmt::fmt;nanobind
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/catch2 : running git submodule update  --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 6.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/test/rxd/testdata'...
Submodule path 'test/rxd/testdata': checked out '1512df7c1bab225f9abc2f30cfd19c084d814d1e'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared        | ON
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/5.0.1/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- NMODL codegen   | OFF
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done (29.0s)
-- Generating done (0.2s)
-- Build files have been written to: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build
[32;1m$ ccache -z[0;m
Statistics zeroed
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Thu Nov 14 09:45:02 2024
Local storage:
  Cache size (GiB): 0.0 / 5.0 ( 0.00%)
  Files:              0
  Hits:               0
  Misses:             0
  Reads:              0
  Writes:             0
[32;1m$ cmake --build . --parallel[0;m
[0/2] Re-checking globbed directories...
[1/1936] Generating share/nrn/demo/demo.hoc
[2/1936] Generating share/nrn/demo/demo.ses
[3/1936] Generating share/nrn/demo/d3init.hoc
[4/1936] Generating share/nrn/demo/cycle.hoc
[5/1936] Generating share/nrn/demo/dend3/syn3.hoc
[6/1936] Generating share/nrn/demo/dend3.ses
[7/1936] Generating share/nrn/demo/dend3/control.hoc
[8/1936] Generating share/nrn/demo/dend3/dend3.nrn
[9/1936] Generating share/nrn/demo/dynclamp.ses
[10/1936] Generating share/nrn/demo/dynchan.ses
[11/1936] Generating share/nrn/demo/dynclamp.hoc
[12/1936] Generating share/nrn/demo/pyramid.nrn
[13/1936] Generating share/nrn/demo/pyramid.ses
[14/1936] Generating share/nrn/demo/hh.hoc
[15/1936] Generating share/nrn/demo/hh.ses
[16/1936] Generating share/nrn/demo/nomodel.hoc
[17/1936] Update hh.mod for CoreNEURON compatibility
[18/1936] Generating share/nrn/demo/release.hoc
[19/1936] Generating share/nrn/demo/release.ses
[20/1936] Generating share/nrn/demo/reconst.hoc
[21/1936] Generating share/nrn/demo/release/cachan1.mod
[22/1936] Generating share/nrn/demo/release/cabpump.mod
[23/1936] Generating share/nrn/demo/release/camchan.mod
[24/1936] Generating share/nrn/demo/release/capmpr.mod
[25/1936] Generating share/nrn/demo/release/capump.mod
[26/1936] Generating share/nrn/demo/release/invlfire.mod
[27/1936] Generating share/nrn/demo/release/nacaex.mod
[28/1936] Generating share/nrn/demo/release/nachan.mod
[29/1936] Generating share/nrn/demo/release/khhchan.mod
[30/1936] Generating share/nrn/demo/release/release.mod
[31/1936] Generating share/nrn/demo/singhh.hoc
[32/1936] Generating share/nrn/demo/sync/init.hoc
[33/1936] Generating share/nrn/demo/sync/demosync.hoc
[34/1936] Generating share/nrn/demo/singhhchan.hoc
[35/1936] Generating share/nrn/demo/singhh.ses
[36/1936] Generating share/nrn/demo/sync/cell.hoc
[37/1936] Generating share/nrn/demo/sync/start.ses
[38/1936] Generating share/nrn/demo/sync/spkplot.hoc
[39/1936] Generating share/nrn/demo/sync/synchronize.hoc
[40/1936] Generating share/nrn/demo/testca.hoc
[41/1936] Generating share/nrn/lib/auditscripts/hocaudit.sh
[42/1936] Generating share/nrn/lib/auditscripts/notes
[43/1936] Generating share/nrn/lib/auditscripts/saveaudit
[44/1936] Generating share/nrn/lib/auditscripts/gettarname
[45/1936] Generating share/nrn/lib/helpdict
[46/1936] Generating share/nrn/lib/auditscripts/retrieve.sh
[47/1936] Generating share/nrn/lib/cleanup
[48/1936] Generating share/nrn/lib/hoc/atoltool.hoc
[49/1936] Generating share/nrn/lib/hoc/attshape.hoc
[50/1936] Generating share/nrn/lib/hoc/celbild.hoc
[51/1936] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[52/1936] Generating share/nrn/lib/hoc/binfo.hoc
[53/1936] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[54/1936] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[55/1936] Generating share/nrn/lib/hoc/celbild/celset.hoc
[56/1936] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[57/1936] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[58/1936] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[59/1936] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[60/1936] Generating share/nrn/lib/hoc/chanbild.hoc
[61/1936] Generating share/nrn/lib/hoc/chanbild/const.hoc
[62/1936] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[63/1936] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[64/1936] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[65/1936] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[66/1936] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[67/1936] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[68/1936] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[69/1936] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[70/1936] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[71/1936] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[72/1936] Generating share/nrn/lib/hoc/corenrn.hoc
[73/1936] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[74/1936] Generating share/nrn/lib/hoc/electrod.hoc
[75/1936] Generating share/nrn/lib/hoc/gatherv.hoc
[76/1936] Generating share/nrn/lib/hoc/chanbild/table.hoc
[77/1936] Generating share/nrn/lib/hoc/funfit.hoc
[78/1936] Generating share/nrn/lib/hoc/grapher.hoc
[79/1936] Generating share/nrn/lib/hoc/family.hoc
[80/1936] Generating share/nrn/lib/hoc/impedanc.hoc
[81/1936] Generating share/nrn/lib/hoc/import3d.hoc
[82/1936] Generating share/nrn/lib/hoc/impedanx.hoc
[83/1936] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
[84/1936] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[85/1936] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[86/1936] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[87/1936] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[88/1936] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[89/1936] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[90/1936] Generating share/nrn/lib/hoc/inserter.hoc
[91/1936] Generating share/nrn/lib/hoc/impratio.hoc
[92/1936] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[93/1936] Generating share/nrn/lib/hoc/lincir.hoc
[94/1936] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
[95/1936] Generating share/nrn/lib/hoc/lincir/lingraph.hoc
[96/1936] Generating share/nrn/lib/hoc/lincir/linmech.hoc
[97/1936] Generating share/nrn/lib/hoc/loadbal.hoc
[98/1936] Generating share/nrn/lib/hoc/logax.hoc
[99/1936] Generating share/nrn/lib/hoc/macload.hoc
[100/1936] Generating share/nrn/lib/hoc/modlunit.hoc
[101/1936] Generating share/nrn/lib/hoc/mulfit/clampfit.hoc
[102/1936] Generating share/nrn/lib/hoc/mkcurve.hoc
[103/1936] Generating share/nrn/lib/hoc/mulfit.hoc
[104/1936] Generating share/nrn/lib/hoc/mknrndll.hoc
[105/1936] Generating share/nrn/lib/hoc/movierun.hoc
[106/1936] Generating share/nrn/lib/hoc/mulfit/e_norm.hoc
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[108/1936] Generating share/nrn/lib/hoc/mulfit/e_y.hoc
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[172/1936] Generating share/nrn/lib/python/neuron/__init__.py
[173/1936] Generating share/nrn/lib/python/neuron/config.py
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[177/1936] Generating share/nrn/lib/python/neuron/gui.py
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[179/1936] Generating share/nrn/lib/python/neuron/expect_hocerr.py
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[182/1936] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[183/1936] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[184/1936] Generating share/nrn/lib/python/neuron/hclass3.py
[185/1936] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[186/1936] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[187/1936] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[188/1936] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py
[189/1936] Generating share/nrn/lib/python/neuron/neuroml/neuroml.py
[190/1936] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
[191/1936] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py
[192/1936] Generating help_data.dat
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[194/1936] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[195/1936] Generating share/nrn/lib/python/neuron/psection.py
[196/1936] Generating share/nrn/lib/python/neuron/rxd/__init__.py
[197/1936] Generating share/nrn/lib/python/neuron/rxd/constants.py
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[204/1936] Generating share/nrn/lib/python/neuron/rxd/geometry3d/__init__.py
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[238/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d_cvode.py
[239/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/multicompartment_reactions.py
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[251/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux.py
[252/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux_cvode.py
[253/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/pump.mod
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[259/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_cvode.py
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[263/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode.py
[264/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode_change_nthread.py
[265/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/pure_diffusion_hybrid_cvode.py
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[267/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/torun.txt
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[270/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_mebrane_mismatch.py
[271/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_del.py
[272/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_with_v.py
[273/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/nodes_update.py
[274/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions.py
[275/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion.py
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[277/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/reaction_null_dest.py
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[293/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree_25_5.py
[294/1936] Generating share/nrn/lib/python/neuron/sections.py
[295/1936] Generating share/nrn/lib/python/neuron/rxdtests/tests/wave1d/wave1d_tree2_25_5.py
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[301/1936] Generating share/nrn/lib/python/neuron/tests/utils/capture_stdout.py
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[304/1936] Generating share/nrn/lib/python/neuron/tests/utils/__init__.py
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[312/1936] Generating share/nrn/lib/python/scripts/idraw
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[314/1936] Generating share/nrn/lib/python/scripts/nmodl
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[316/1936] Generating share/nrn/lib/python/scripts/neurondemo
[317/1936] Generating share/nrn/lib/python/scripts/nrniv
[318/1936] Generating share/nrn/lib/python/scripts/nrniv-core
[319/1936] Generating share/nrn/lib/python/scripts/nrnivmodl-core
[320/1936] Generating share/nrn/lib/python/scripts/nrnpyenv.sh
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[323/1936] Generating share/nrn/lib/shape.cm2
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[325/1936] Generating include/bbsavestate.h
[326/1936] Generating include/cabcode.h
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[328/1936] Generating include/deflate.hpp
[329/1936] Generating include/euler.hpp
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[338/1936] Generating include/hoc_membf.h
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[346/1936] Generating include/mech_api.h
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[351/1936] Generating include/memory.hpp
[352/1936] Generating include/neuron.h
[353/1936] Generating include/multicore.h
[354/1936] Generating include/neuron/container/data_handle.hpp
[355/1936] Generating include/neuron/container/non_owning_soa_identifier.hpp
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[359/1936] Generating include/neuronapi.h
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[367/1936] Generating include/nrniv_mf.h
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[380/1936] Generating include/parse_with_deps.hpp
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[392/1936] Generating include/treeset.h
[393/1936] Generating include/wrap_sprintf.h
[394/1936] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! --
[395/1936] Building CXX object external/fmt/CMakeFiles/fmt.dir/src/os.cc.o
[396/1936] -- NMODL : GENERATING VERBATIM PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated]
   29 | %name-prefix "Verbatim_"
      | ^~~~~~~~~~~~~~~~~~~~~~~~
      | %define api.prefix {Verbatim_}
../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
[397/1936] -- NMODL : GENERATING DIFFERENTIAL EQUATION PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/diffeq.yy:56.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated]
   56 | %define parser_class_name {DiffeqParser}
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      | %define api.parser.class {DiffeqParser}
../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
[398/1936] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o
[399/1936] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/file_sinks.cpp.o
[400/1936] -- NMODL : GENERATING UNIT PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated]
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[608/1936] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/sputils.cpp.o
[609/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o
[610/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o
[611/1936] Linking CXX static library lib/libsparse13.a
[612/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o
[613/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o
[614/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
[615/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o
[616/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[617/1936] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[618/1936] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[619/1936] [BISON][nocmodlparser] Building diffeq with bison 3.8.2
../src/nocmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nocmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[620/1936] Generating ../../share/nrn/nrnmain.cpp
[621/1936] Generating ../../include/nrnmpiuse.h
[622/1936] Generating ../../include/nrncvode/nrnneosm.h
[623/1936] Generating ../oc/hocusr.h
[624/1936] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[625/1936] Generating ../../include/nrnconf.h
[626/1936] Linking CXX static library lib/libcoreneuron-core.a
[627/1936] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[628/1936] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o
[629/1936] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_benchmark_function.cpp.o
[630/1936] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[631/1936] [BISON][modlunitparser] Building parser with bison 3.8.2
[632/1936] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generator_exception.cpp.o
[633/1936] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o
[634/1936] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nocmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nocmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[635/1936] cd /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[636/1936] Linking CXX static library lib/libnrngnu.a
[637/1936] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o
[638/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[639/1936] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_analyse.cpp.o
[640/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[641/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[642/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
[643/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[644/1936] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o
[645/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[646/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[647/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o
[648/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[649/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[650/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
[651/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o
[652/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[653/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/consist.cpp.o
[654/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/discrete.cpp.o
[655/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/deriv.cpp.o
[656/1936] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[657/1936] Linking CXX executable bin/modlunit
[658/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/list.cpp.o
[659/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/init.cpp.o
[660/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/io.cpp.o
[661/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/kinetic.cpp.o
[662/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/netrec_discon.cpp.o
[663/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/noccout.cpp.o
[664/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/modlunit/units.cpp.o
[665/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/simultan.cpp.o
[666/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/solve.cpp.o
[667/1936] cd /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrniv && true
[668/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/symbol.cpp.o
[669/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/parsact.cpp.o
[670/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrn_metaclass.cpp.o
[671/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[672/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[673/1936] Running nrnivmodl-core with internal mod files
WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
[674/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[675/1936] Building CXX object src/nrnpython/CMakeFiles/nanobind.dir/__/__/external/nanobind/src/nb_combined.cpp.o
[676/1936] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o
[677/1936] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nocmodl/nocpout.cpp.o
[678/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/grids.cpp.o
[679/1936] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o
[680/1936] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o
[681/1936] Building CXX object test/coreneuron/unit/random/CMakeFiles/random_test_bin.dir/test_random.cpp.o
[682/1936] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o
[683/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_hoc.cpp.o
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:10:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:211:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>]
    return nrn::convert_cxx_exceptions(nrnexec, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:10:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(PyHocObject *, _object *), PyHocObject *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:2498:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(PyHocObject *, _object *), Args = <PyHocObject *&, _object *&>]
    return nrn::convert_cxx_exceptions(hocobj_same, pself, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
2 warnings generated.
[684/1936] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o
[685/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_marching_cubes.cpp.o
[686/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpython.cpp.o
[687/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_llgramarea.cpp.o
[688/1936] Linking CXX static library lib/libnanobind.a
[689/1936] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, _object *), _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:208:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, _object *), Args = <_object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_contains, sec, obj);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySecObj *, _object *, _object *), NPySecObj *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:434:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySecObj *, _object *, _object *), Args = <NPySecObj *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyAllSegOfSecIter *, _object *, _object *), NPyAllSegOfSecIter *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:452:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyAllSegOfSecIter *, _object *, _object *), Args = <NPyAllSegOfSecIter *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyAllSegOfSecIter_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_typeobject *, _object *, _object *), _typeobject *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:469:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_typeobject *, _object *, _object *), Args = <_typeobject *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_new, type, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *, _object *), _object *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:494:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *, _object *), Args = <_object *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(nrnpy_newsecobj, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyMechObj *, _object *, _object *), NPyMechObj *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:670:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyMechObj *, _object *, _object *), Args = <NPyMechObj *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyMechObj_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyRangeVar *, _object *, _object *), NPyRangeVar *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:678:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyRangeVar *, _object *, _object *), Args = <NPyRangeVar *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyRangeVar_init, self, args, kwds);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:688:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *), NPySecObj *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:735:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *), Args = <NPySecObj *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPySecObj_pt3dclear, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *), _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:955:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *), Args = <_object *&>]
    return nrn::convert_cxx_exceptions(pysec_repr, p);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&))(_object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1006:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>]
    return nrn::convert_cxx_exceptions(nrnpy_set_psection, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *const &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1153:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *const &>]
    return nrn::convert_cxx_exceptions(pysec_children, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<long (*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<long (*)(_object *), _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1221:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = long (*)(_object *), Args = <_object *&>]
    return nrn::convert_cxx_exceptions(pysec_hash, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<long (*(_object *&))(_object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *, int), NPySegObj *&, _object *&, int &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1245:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *, int), Args = <NPySegObj *&, _object *&, int &>]
    return nrn::convert_cxx_exceptions(pyseg_richcmp, self, other, op);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *, int), NPySecObj *&, _object *&, int &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1266:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *, int), Args = <NPySecObj *&, _object *&, int &>]
    return nrn::convert_cxx_exceptions(pysec_richcmp, self, other, op);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *), NPyMechObj *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1300:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *), Args = <NPyMechObj *&>]
    return nrn::convert_cxx_exceptions(NPyMechObj_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *), NPyMechFunc *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1313:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *), Args = <NPyMechFunc *&>]
    return nrn::convert_cxx_exceptions(NPyMechFunc_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *, _object *), NPyMechFunc *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1342:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *, _object *), Args = <NPyMechFunc *&, _object *&>]
    return nrn::convert_cxx_exceptions(NPyMechFunc_call, self, args);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyRangeVar *), NPyRangeVar *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1416:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyRangeVar *), Args = <NPyRangeVar *&>]
    return nrn::convert_cxx_exceptions(NPyRangeVar_name, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyAllSegOfSecIter *), NPyAllSegOfSecIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1623:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyAllSegOfSecIter *), Args = <NPyAllSegOfSecIter *&>]
    return nrn::convert_cxx_exceptions(allseg_of_sec_iter, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegOfSecIter *), NPySegOfSecIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1675:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegOfSecIter *), Args = <NPySegOfSecIter *&>]
    return nrn::convert_cxx_exceptions(seg_of_sec_next, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *), NPySegObj *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1693:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *), Args = <NPySegObj *&>]
    return nrn::convert_cxx_exceptions(seg_point_processes, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechOfSegIter *), NPyMechOfSegIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2120:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechOfSegIter *), Args = <NPyMechOfSegIter *&>]
    return nrn::convert_cxx_exceptions(mech_of_seg_next, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyVarOfMechIter *), NPyVarOfMechIter *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2160:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyVarOfMechIter *), Args = <NPyVarOfMechIter *&>]
    return nrn::convert_cxx_exceptions(var_of_mech_next, self);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *), NPySegObj *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2276:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *), Args = <NPySegObj *&, _object *&>]
    return nrn::convert_cxx_exceptions(segment_getattro, self, pyname);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySegObj *, _object *, _object *), NPySegObj *&, _object *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2381:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySegObj *, _object *, _object *), Args = <NPySegObj *&, _object *&, _object *&>]
    return nrn::convert_cxx_exceptions(segment_setattro, self, pyname, value);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *, _object *), NPyMechObj *&, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2542:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *, _object *), Args = <NPyMechObj *&, _object *&>]
    return nrn::convert_cxx_exceptions(mech_getattro, self, pyname);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, long), _object *&, long &>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2682:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, long), Args = <_object *&, long &>]
    return nrn::convert_cxx_exceptions(rv_getitem, self, ix);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
In file included from /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:13:
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' is deprecated [-Wdeprecated-declarations]
    using return_type = typename std::result_of<F(Args...)>::type;
                                      ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, long, _object *), _object *&, long &, _object *&>' requested here
static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions(
                ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2735:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, long, _object *), Args = <_object *&, long &, _object *&>]
    return nrn::convert_cxx_exceptions(rv_setitem, self, ix, value);
           ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' has been explicitly marked deprecated here
template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of;
                                 ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17'
#  define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED
                                      ^
/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED'
#    define _LIBCPP_DEPRECATED __attribute__ ((deprecated))
                                               ^
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/pattern.cpp
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Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/stim.cpp
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/syn.cpp
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Translating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
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#pragma STDC FENV_ACCESS ON
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/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/oc/math.cpp:3:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
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/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/src/oc/hoc.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
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INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv']})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
KeyError: 'setuptools_scm'
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
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INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
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INFO:root:creating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/tests/test_rxd.json -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/[email protected]/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1111/1936] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod
[1112/1936] Building special[-core] for test group coverage_tests
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> Compiling mod_func.cpp
 -> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1113/1936] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1114/1936] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1115/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod
[1116/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod
[1117/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod
[1118/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod
[1119/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod
[1120/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod
[1121/1936] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1122/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod
[1123/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod
[1124/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[1125/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[1126/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[1127/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[1128/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[1129/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[1130/1936] Linking CXX executable bin/test/nrn-benchmarks
[1131/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[1132/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[1133/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[1134/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1135/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1136/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1137/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1138/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1139/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1140/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1141/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1142/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1143/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1144/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1145/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1146/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1147/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1148/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1149/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1150/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1151/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1152/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1153/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1154/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1155/1936] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1156/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/atest.mod
[1157/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand.mod
[1158/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_art.mod
[1159/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_pp.mod
[1160/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.inc
[1161/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.mod
[1162/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_pp.mod
[1163/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ppts.mod
[1164/1936] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ts.mod
[1165/1936] Building special[-core] for test group datahandle
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3
cfiles =
Mod files: "./opaque_ptr_mod.mod" "./opaque_token.mod" "./psection_regression.mod" "./ptr.mod" "./ptr_mod.mod" "./random.mod"

MODOBJS= ./opaque_ptr_mod.o ./opaque_token.o ./psection_regression.o ./ptr.o ./ptr_mod.o ./random.o
 -> Compiling mod_func.cpp
 -> NMODL .././opaque_ptr_mod.mod
 -> NMODL .././opaque_token.mod
 -> NMODL .././psection_regression.mod
Translating psection_regression.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/psection_regression.cpp
Thread Safe
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/opaque_token.cpp
Notice: VERBATIM blocks are not thread safe
Translating opaque_ptr_mod.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/opaque_ptr_mod.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././ptr.mod
 -> NMODL .././ptr_mod.mod
 -> NMODL .././random.mod
Translating ptr_mod.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/ptr_mod.cpp
Notice: Use of POINTER is not thread safe.
Translating random.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/random.cpp
Thread Safe
Translating ptr.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/opaque_ptr_mod.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/opaque_token.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/psection_regression.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/ptr.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/ptr_mod.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/random.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/9d90f4b9872e3cd05c7e995e7f639aee3674332abcb50efb70af61486b26ceb3/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1166/1936] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1167/1936] Generating datahandle/datahandle_tests/test/datahandle/test_opaque_ptr.py
[1168/1936] Generating datahandle/datahandle_tests/test/datahandle/test_psection.py
[1169/1936] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1170/1936] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1171/1936] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1172/1936] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1173/1936] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1174/1936] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1175/1936] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o
[1176/1936] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py
[1177/1936] Generating nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/cadif.mod
[1178/1936] Generating nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/fornetcon.mod
[1179/1936] Generating nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/hhwatch.mod
[1180/1936] Generating nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/k3st.mod
[1181/1936] Generating nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/table.mod
[1182/1936] Generating nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/variabletypes.mod
[1183/1936] Building special[-core] for test group pytest
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"

MODOBJS= ./mcna.o
 -> Compiling mod_func.cpp
 -> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1184/1936] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1185/1936] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1186/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc
[1187/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod
[1188/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod
[1189/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod
[1190/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod
[1191/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod
[1192/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod
[1193/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod
[1194/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod
[1195/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod
[1196/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod
[1197/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod
[1198/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod
[1199/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod
[1200/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod
[1201/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod
[1202/1936] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod
[1203/1936] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o
[1204/1936] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o
[1205/1936] Building CXX object test/api/CMakeFiles/hh_sim_cpp.dir/hh_sim.cpp.o
[1206/1936] Linking CXX executable bin/test/hh_sim_cpp
[1207/1936] Building CXX object test/api/CMakeFiles/sections_cpp.dir/sections.cpp.o
[1208/1936] Linking CXX executable bin/test/sections_cpp
[1209/1936] Building CXX object test/api/CMakeFiles/netcon_cpp.dir/netcon.cpp.o
[1210/1936] Linking CXX executable bin/test/netcon_cpp
[1211/1936] Generating nrniv_script.py/do_nothing.py
[1212/1936] Generating nrniv_script.py_error/assert_false.py
[1213/1936] Generating nrniv_two_scripts.py/do_nothing.py
[1214/1936] Generating nrniv_two_scripts.py_error_check_code/assert_false.py
[1215/1936] Generating nrniv_two_scripts.py_error_check_code/do_nothing.py
[1216/1936] Generating nrniv_two_scripts.py_error_check_output/assert_false.py
[1217/1936] Generating nrniv_two_scripts.py_error_check_output/do_nothing.py
[1218/1936] Generating nrniv_python_script.py/do_nothing.py
[1219/1936] Generating nrniv_python_script.py_error/assert_false.py
[1220/1936] Generating nrniv_python_script.py_twice/assert_false.py
[1221/1936] Generating nrniv_python_script.py_twice/do_nothing.py
[1222/1936] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py
[1223/1936] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py
[1224/1936] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py
[1225/1936] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc
[1226/1936] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py
[1227/1936] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py
[1228/1936] Generating nrniv_py3.10_python_check_sys_prefix/dump_sys_attr.py
[1229/1936] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc
[1230/1936] Generating nrniv_py3.10_nrnpython_check_sys_prefix/dump_sys_attr.py
[1231/1936] Generating nrniv_py3.10_python_check_sys_exec_prefix/check_sys_attr.py
[1232/1936] Generating nrniv_py3.10_python_check_sys_exec_prefix/dump_sys_attr.py
[1233/1936] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[1234/1936] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[1235/1936] Generating nrniv_py3.10_python_check_sys_base_prefix/check_sys_attr.py
[1236/1936] Generating nrniv_py3.10_python_check_sys_base_prefix/dump_sys_attr.py
[1237/1936] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[1238/1936] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[1239/1936] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py
[1240/1936] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/dump_sys_attr.py
[1241/1936] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[1242/1936] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[1243/1936] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py
[1244/1936] Generating nrniv_py3.10_python_check_sys_stderr.encoding/dump_sys_attr.py
[1245/1936] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[1246/1936] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[1247/1936] Generating nrniv_py3.10_python_check_sys_stdin.encoding/check_sys_attr.py
[1248/1936] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py
[1249/1936] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[1250/1936] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[1251/1936] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py
[1252/1936] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py
[1253/1936] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[1254/1936] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[1255/1936] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py
[1256/1936] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py
[1257/1936] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc
[1258/1936] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py
[1259/1936] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py
[1260/1936] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py
[1261/1936] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc
[1262/1936] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py
[1263/1936] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py
[1264/1936] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py
[1265/1936] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[1266/1936] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[1267/1936] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py
[1268/1936] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py
[1269/1936] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[1270/1936] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[1271/1936] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py
[1272/1936] Building special[-core] for test group parallel
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././name_clashes.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
 -> NMODL .././unitstest.mod
 -> NMODL .././version_macros.mod
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1273/1936] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py
[1274/1936] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1275/1936] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1276/1936] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1277/1936] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1278/1936] Generating parallel/bas/test/parallel_tests/test_bas.py
[1279/1936] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1280/1936] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1281/1936] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1282/1936] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[1283/1936] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[1284/1936] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py
[1285/1936] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py
[1286/1936] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[1287/1936] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[1288/1936] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py
[1289/1936] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py
[1290/1936] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[1291/1936] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[1292/1936] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py
[1293/1936] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py
[1294/1936] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[1295/1936] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[1296/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1297/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1298/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1299/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1300/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1301/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1302/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1303/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1304/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1305/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1306/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1307/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1308/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1309/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1310/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1311/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1312/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1313/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1314/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1315/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1316/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1317/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1318/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1319/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1320/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1321/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1322/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1323/1936] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1324/1936] Generating ../../compare_test_results.py
[1325/1936] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1326/1936] Building CXX object test/api/CMakeFiles/vclamp_cpp.dir/vclamp.cpp.o
[1327/1936] Linking CXX executable bin/test/vclamp_cpp
[1328/1936] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod
[1329/1936] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capmpr.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capmpr.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
 -> Compiling mod_func.cpp
 -> NMODL ../cabpump.mod
 -> NMODL ../cachan1.mod
 -> NMODL ../camchan.mod
Translating camchan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Thread Safe
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL ../capmpr.mod
 -> NMODL ../capump.mod
 -> NMODL ../invlfire.mod
Translating capump.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Translating capmpr.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capmpr.cpp
Thread Safe
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL ../nacaex.mod
 -> NMODL ../khhchan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
 -> NMODL ../nachan.mod
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
Thread Safe
 -> NMODL ../release.mod
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating nachan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capmpr.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1330/1936] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
[1331/1936] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1332/1936] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1333/1936] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1334/1936] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1335/1936] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1336/1936] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1337/1936] Building special[-core] for test group hoctests
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad
cfiles =
Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"

MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
 -> Compiling mod_func.cpp
 -> NMODL .././atest.mod
 -> NMODL .././rand.mod
 -> NMODL .././rand_art.mod
Translating rand.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Translating atest.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Thread Safe
Thread Safe
Translating rand_art.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
Thread Safe
 -> NMODL .././rand_pp.mod
 -> NMODL .././sdata.mod
 -> NMODL .././sdata_pp.mod
Translating rand_pp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
Thread Safe
Translating sdata.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
Notice: VERBATIM blocks are not thread safe
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././sdata_ppts.mod
 -> NMODL .././sdata_ts.mod
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1338/1936] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1339/1936] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1340/1936] Generating hoctests/test_random_hoc/expect_err.hoc
[1341/1936] Generating hoctests/test_random_hoc/tests/test_random.hoc
[1342/1936] Generating hoctests/test_random_hoc/tests/test_random.json
[1343/1936] Generating hoctests/perf1_hoc/expect_err.hoc
[1344/1936] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1345/1936] Generating hoctests/test1_hoc/expect_err.hoc
[1346/1936] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1347/1936] Generating hoctests/test2_hoc/expect_err.hoc
[1348/1936] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1349/1936] Building special[-core] for test group pytest_coreneuron
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././name_clashes.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating follower.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Thread Safe
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Thread Safe
 -> NMODL .././unitstest.mod
 -> NMODL .././version_macros.mod
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1350/1936] Generating hoctests/test3_hoc/expect_err.hoc
[1351/1936] Building special[-core] for test group nmodl_tests
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f
cfiles =
Mod files: "./cadif.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././cadif.mod
 -> NMODL .././fornetcon.mod
 -> NMODL .././hhwatch.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/fornetcon.cpp
Thread Safe
Translating cadif.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/cadif.cpp
Thread Safe
 -> NMODL .././k3st.mod
 -> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/hhwatch.cpp
Thread Safe
 -> NMODL .././variabletypes.mod
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/variabletypes.cpp
Thread Safe
Translating table.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/table.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/cadif.cpp
Translating k3st.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/k3st.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/fornetcon.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/k3st.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/table.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/variabletypes.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/8d382ef45ac35851822bfb6d143f4f90de5d8492f1091a2d2e71790f6d6bb79f/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1352/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1353/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1354/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1355/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1356/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1357/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py
[1358/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1359/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1360/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py
[1361/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1362/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1363/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1364/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1365/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1366/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1367/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1368/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1369/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1370/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1371/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1372/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1373/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1374/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1375/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1376/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1377/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1378/1936] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1379/1936] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1380/1936] Generating hoctests/test4_hoc/expect_err.hoc
[1381/1936] Generating hoctests/test5_hoc/expect_err.hoc
[1382/1936] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1383/1936] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1384/1936] Generating hoctests/test6_hoc/expect_err.hoc
[1385/1936] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1386/1936] Generating hoctests/test7_hoc/expect_err.hoc
[1387/1936] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1388/1936] Generating hoctests/test8_hoc/expect_err.hoc
[1389/1936] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1390/1936] Generating hoctests/test9_hoc/expect_err.hoc
[1391/1936] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1392/1936] Generating hoctests/test_bbss_py/tests/test_bbss.py
[1393/1936] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1394/1936] Generating hoctests/test_eion_cover_py/tests/test_eion_cover.py
[1395/1936] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1396/1936] Generating hoctests/test_hoc_class_instance_py/tests/test_hoc_class_instance.py
[1397/1936] Generating hoctests/test_hocmech_py/tests/test_hocmech.py
[1398/1936] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1399/1936] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py
[1400/1936] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1401/1936] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1402/1936] Generating hoctests/test_mechstd_py/tests/test_mechstd.py
[1403/1936] Generating hoctests/test_mode_py/tests/test_mode.py
[1404/1936] Generating hoctests/test_mview_py/tests/test_mview.py
[1405/1936] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1406/1936] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1407/1936] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1408/1936] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json
[1409/1936] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py
[1410/1936] Generating hoctests/test_random_py/tests/test_random.json
[1411/1936] Generating hoctests/test_random_py/tests/test_random.py
[1412/1936] Generating hoctests/test_secref_py/tests/test_secref.py
[1413/1936] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1414/1936] Generating hoctests/test_shape_py/tests/test_shape.py
[1415/1936] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1416/1936] Generating hoctests/test1_py/vardimtests/test1.py
[1417/1936] Generating hoctests/test2_py/vardimtests/test2.py
[1418/1936] Generating hoctests/test9_py/vardimtests/test9.py
[1419/1936] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1420/1936] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1421/1936] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1422/1936] Generating nmodl_tests/test_random/test/nmodl/test_random.py
[1423/1936] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod
[1424/1936] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py
[1425/1936] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1426/1936] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1427/1936] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1428/1936] Generating ../tests/testcorenrn/reference/out_bbcore.spk
[1429/1936] Generating ../tests/testcorenrn/reference/out_conc.spk
[1430/1936] Generating ../tests/testcorenrn/reference/out_deriv.spk
[1431/1936] Generating ../tests/testcorenrn/reference/out_gf.spk
[1432/1936] Generating ../tests/testcorenrn/reference/out_kin.spk
[1433/1936] Generating ../tests/testcorenrn/reference/out_patstim.spk
[1434/1936] Generating ../tests/testcorenrn/reference/out_vecplay.spk
[1435/1936] Generating ../tests/testcorenrn/reference/out_vecevent.spk
[1436/1936] Generating ../tests/testcorenrn/reference/out_watch.spk
[1437/1936] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk
[1438/1936] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1439/1936] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1440/1936] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1441/1936] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o
[1442/1936] Linking CXX executable bin/test/testneuron
[1443/1936] Building special[-core] for test group external_ringtest_nrn
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1444/1936] Generating ../../external_ringtest_nrn/optim_node_order/args.py
[1445/1936] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc
[1446/1936] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc
[1447/1936] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py
[1448/1936] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py
[1449/1936] Generating ../../external_ringtest_nrn/optim_node_order/ring.py
[1450/1936] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py
[1451/1936] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py
[1452/1936] Generating ../../external_ringtest_nrn/optim_node_order/settings.py
[1453/1936] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py
[1454/1936] Building special[-core] for test group external_ringtest
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1455/1936] Generating ../../external_ringtest/neuron/args.py
[1456/1936] Generating ../../external_ringtest/neuron/cell.hoc
[1457/1936] Generating ../../external_ringtest/neuron/celluniform.hoc
[1458/1936] Generating ../../external_ringtest/neuron/commonutils.py
[1459/1936] Generating ../../external_ringtest/neuron/ranparm.py
[1460/1936] Generating ../../external_ringtest/neuron/settings.py
[1461/1936] Generating ../../external_ringtest/neuron/ring.py
[1462/1936] Generating ../../external_ringtest/neuron/ringuniform.py
[1463/1936] Generating ../../external_ringtest/neuron/ringtest.py
[1464/1936] Generating ../../external_ringtest/neuron/test_optimize_node_order.py
[1465/1936] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1466/1936] Generating ../../external_ringtest/neuron_mpi/args.py
[1467/1936] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1468/1936] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1469/1936] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1470/1936] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1471/1936] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1472/1936] Generating ../../external_ringtest/neuron_mpi/ring.py
[1473/1936] Generating ../../external_ringtest/neuron_mpi/settings.py
[1474/1936] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py
[1475/1936] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1476/1936] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1477/1936] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1478/1936] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1479/1936] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1480/1936] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1481/1936] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1482/1936] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1483/1936] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1484/1936] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py
[1485/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1486/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1487/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1488/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1489/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1490/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1491/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1492/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1493/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1494/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py
[1495/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1496/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1497/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1498/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1499/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1500/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1501/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1502/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1503/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1504/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1505/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py
[1506/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1507/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1508/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1509/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1510/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1511/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1512/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1513/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1514/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py
[1515/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1516/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1517/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1518/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1519/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1520/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1521/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1522/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1523/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1524/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1525/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/test_optimize_node_order.py
[1526/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1527/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1528/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1529/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1530/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1531/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1532/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1533/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1534/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/test_optimize_node_order.py
[1535/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1536/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1537/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1538/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1539/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1540/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1541/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1542/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1543/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/args.py
[1544/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1545/1936] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/test_optimize_node_order.py
[1546/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/cell.hoc
[1547/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/celluniform.hoc
[1548/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ranparm.py
[1549/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ring.py
[1550/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/commonutils.py
[1551/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringtest.py
[1552/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringuniform.py
[1553/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/settings.py
[1554/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/args.py
[1555/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/cell.hoc
[1556/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/test_optimize_node_order.py
[1557/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/celluniform.hoc
[1558/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/commonutils.py
[1559/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ranparm.py
[1560/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringtest.py
[1561/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ring.py
[1562/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringuniform.py
[1563/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/settings.py
[1564/1936] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/test_optimize_node_order.py
[1565/1936] Building special[-core] for test group tqperf
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951
cfiles =
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod"

MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
arm64/corenrn/mod2c/invlfiresha.cpp:316:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:321:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:332:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././invlfiresha.mod
 -> NMODL .././invlfire.mod
 -> NMODL .././invlfirestats.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating invlfirestats.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Translating invlfiresha.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:377:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:382:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:393:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./special" LDFLAGS are:    /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib
Successfully created arm64/special
[1566/1936] Generating ../../tqperf/coreneuron_special/extracell.hoc
[1567/1936] Generating ../../tqperf/coreneuron_special/init.hoc
[1568/1936] Generating ../../tqperf/coreneuron_special/invl.hoc
[1569/1936] Generating ../../tqperf/coreneuron_special/mosinit.hoc
[1570/1936] Generating ../../tqperf/coreneuron_special/movie.hoc
[1571/1936] Generating ../../tqperf/coreneuron_special/net.hoc
[1572/1936] Generating ../../tqperf/coreneuron_special/param.hoc
[1573/1936] Generating ../../tqperf/coreneuron_special/perfrun.hoc
[1574/1936] Generating ../../tqperf/coreneuron_special/randist.hoc
[1575/1936] Generating ../../tqperf/coreneuron_special/pltq.hoc
[1576/1936] Generating ../../tqperf/coreneuron_special/run.hoc
[1577/1936] Generating ../../tqperf/coreneuron_special/run128.hoc
[1578/1936] Generating ../../tqperf/coreneuron_special/runs.hoc
[1579/1936] Generating ../../tqperf/coreneuron_special/spkplt.hoc
[1580/1936] Generating ../../tqperf/coreneuron_special/spike2file.hoc
[1581/1936] Generating ../../tqperf/coreneuron_special/test1.py
[1582/1936] Generating ../../tqperf/coreneuron_special/table.hoc
[1583/1936] Generating ../../tqperf/coreneuron_special/tperf.hoc
[1584/1936] Generating ../../tqperf/coreneuron_special/tperfnew.hoc
[1585/1936] Generating ../../tqperf/coreneuron_python/extracell.hoc
[1586/1936] Generating ../../tqperf/coreneuron_python/init.hoc
[1587/1936] Generating ../../tqperf/coreneuron_python/invl.hoc
[1588/1936] Generating ../../tqperf/coreneuron_python/mosinit.hoc
[1589/1936] Generating ../../tqperf/coreneuron_python/movie.hoc
[1590/1936] Generating ../../tqperf/coreneuron_python/net.hoc
[1591/1936] Generating ../../tqperf/coreneuron_python/param.hoc
[1592/1936] Generating ../../tqperf/coreneuron_python/pltq.hoc
[1593/1936] Generating ../../tqperf/coreneuron_python/perfrun.hoc
[1594/1936] Generating ../../tqperf/coreneuron_python/randist.hoc
[1595/1936] Generating ../../tqperf/coreneuron_python/run.hoc
[1596/1936] Generating ../../tqperf/coreneuron_python/run128.hoc
[1597/1936] Generating ../../tqperf/coreneuron_python/runs.hoc
[1598/1936] Generating ../../tqperf/coreneuron_python/spike2file.hoc
[1599/1936] Generating ../../tqperf/coreneuron_python/spkplt.hoc
[1600/1936] Generating ../../tqperf/coreneuron_python/table.hoc
[1601/1936] Generating ../../tqperf/coreneuron_python/test1.py
[1602/1936] Generating ../../tqperf/coreneuron_python/tperf.hoc
[1603/1936] Generating ../../tqperf/coreneuron_python/tperfnew.hoc
[1604/1936] Building special[-core] for test group testcorenrn_bbcore
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhderiv.mod
 -> NMODL .././hhkin.mod
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Thread Safe
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././nacum.mod
 -> NMODL .././vecevent.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1605/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1606/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1607/1936] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1608/1936] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1609/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1610/1936] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1611/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1612/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1613/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1614/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1615/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1616/1936] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1617/1936] Generating ../../testcorenrn_conc/neuron/common.hoc
[1618/1936] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1619/1936] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1620/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1621/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1622/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1623/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1624/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1625/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1626/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1627/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1628/1936] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1629/1936] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1630/1936] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1631/1936] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1632/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1633/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1634/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1635/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1636/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1637/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1638/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1639/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1640/1936] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1641/1936] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1642/1936] Generating ../../testcorenrn_gf/neuron/common.hoc
[1643/1936] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1644/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1645/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1646/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1647/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1648/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1649/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1650/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1651/1936] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1652/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1653/1936] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1654/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1655/1936] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1656/1936] Generating ../../testcorenrn_kin/neuron/common.hoc
[1657/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1658/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1659/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1660/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1661/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1662/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1663/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1664/1936] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1665/1936] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1666/1936] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1667/1936] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1668/1936] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1669/1936] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1670/1936] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1671/1936] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1672/1936] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1673/1936] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1674/1936] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1675/1936] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1676/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1677/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1678/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1679/1936] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1680/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1681/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1682/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1683/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1684/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1685/1936] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1686/1936] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1687/1936] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1688/1936] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1689/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1690/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1691/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1692/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1693/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1694/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1695/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1696/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1697/1936] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1698/1936] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1699/1936] Generating ../../testcorenrn_watch/neuron/common.hoc
[1700/1936] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1701/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1702/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1703/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1704/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1705/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1706/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1707/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1708/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1709/1936] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1710/1936] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1711/1936] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1712/1936] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1713/1936] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1714/1936] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1715/1936] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1716/1936] Building special[-core] for test group coreneuron_modtests
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./green.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./noisychan.mod" "./red.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" "./watchrange2.mod"

MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./red.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./watchrange2.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././axial.mod
 -> NMODL .././axial_pp.mod
 -> NMODL .././bacur.mod
Translating axial.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp
INCLUDEing axial.inc
Translating bacur.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp
INCLUDEing axial.inc
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././banocur.mod
 -> NMODL .././fornetcon.mod
 -> NMODL .././green.mod
Translating banocur.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Translating green.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp
Warning: dt undefined. (declared within VERBATIM?)
Thread Safe
 -> NMODL .././invlfire.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp
 -> NMODL .././natrans.mod
Thread Safe
 -> NMODL .././netmove.mod
Translating natrans.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp
Thread Safe
 -> NMODL .././noisychan.mod
 -> NMODL .././red.mod
Translating netmove.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp
Thread Safe
Translating noisychan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp
Thread Safe
 -> NMODL .././sample.mod
Translating red.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp
 -> NMODL .././unitstest.mod
Thread Safe
 -> NMODL .././version_macros.mod
Translating sample.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp
Thread Safe
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp
Thread Safe
 -> NMODL .././watchrange.mod
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp
Thread Safe
 -> NMODL .././watchrange2.mod
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp
Thread Safe
Translating watchrange2.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1717/1936] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1718/1936] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1719/1936] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1720/1936] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1721/1936] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1722/1936] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1723/1936] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1724/1936] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1725/1936] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1726/1936] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1727/1936] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1728/1936] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1729/1936] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1730/1936] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1731/1936] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1732/1936] Generating coreneuron_modtests/test_nmodlrandom_py_cpu/test/coreneuron/test_nmodlrandom.py
[1733/1936] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1734/1936] Generating coreneuron_modtests/array_variable_transfer_run_mode_0_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1735/1936] Generating coreneuron_modtests/test_nmodlrandom_syntax_py_cpu/test/coreneuron/test_nmodlrandom_syntax.py
[1736/1936] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1737/1936] Generating coreneuron_modtests/array_variable_transfer_run_mode_2_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1738/1936] Generating coreneuron_modtests/array_variable_transfer_run_mode_1_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1739/1936] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1740/1936] Generating coreneuron_modtests/array_variable_transfer_file_mode_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1741/1936] Building special[-core] for test group example_nmodl
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> Compiling mod_func.cpp
 -> NMODL .././argpass.mod
 -> NMODL .././cabpump.mod
 -> NMODL .././cachan.mod
Translating argpass.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cacum.mod
Translating cachan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Thread Safe
 -> NMODL .././cacur.mod
 -> NMODL .././cadif.mod
Translating cacum.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
 -> NMODL .././cadifusl.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
 -> NMODL .././cagk.mod
Translating cacur.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
 -> NMODL .././cagkftab.mod
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././capmp.mod
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
Translating cagk.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
 -> NMODL .././expsynspine.mod
 -> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././fit1.mod
Translating fit1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
Translating fh.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
 -> NMODL .././gap.mod
 -> NMODL .././hh1.mod
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
 -> NMODL .././hhvect.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././inatest.mod
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././ionleak.mod
Translating hh1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
Translating inatest.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
 -> NMODL .././nacum.mod
 -> NMODL .././nacur.mod
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
 -> NMODL .././nadifl.mod
Translating nacur.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
 -> NMODL .././nonlin.mod
 -> NMODL .././obj_ex.mod
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
 -> NMODL .././order.mod
Translating order.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> NMODL .././passiv.mod
 -> NMODL .././rchan.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
 -> NMODL .././stim1.mod
Translating passiv.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
Translating rchan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././str.mod
 -> NMODL .././syn1.mod
Translating stim1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
 -> NMODL .././synpre.mod
Translating str.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././trivial.mod
Translating syn1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
 -> NMODL .././tstdarray.mod
Translating synpre.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././tstextrn.mod
 -> NMODL .././tstpnt1.mod
Translating trivial.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
 -> NMODL .././tstpnt2.mod
 -> NMODL .././tstvec.mod
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of POINTER is not thread safe.
Notice: Use of EXTERNAL is not thread safe.
 -> NMODL .././vclmp1.mod
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././vlag.mod
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Translating vlag.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1742/1936] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1743/1936] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1744/1936] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1745/1936] Generating example_nmodl/cachan_hoc/cachan.hoc
[1746/1936] Generating example_nmodl/cadif_hoc/cadif.hoc
[1747/1936] Generating example_nmodl/cadif_hoc/cadif.ses
[1748/1936] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1749/1936] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1750/1936] Generating example_nmodl/cv_hoc/cv.hoc
[1751/1936] Generating example_nmodl/cagk_hoc/cagk.hoc
[1752/1936] Generating example_nmodl/fit1_hoc/fit1.hoc
[1753/1936] Generating example_nmodl/nacum_hoc/nacum.hoc
[1754/1936] Generating example_nmodl/capmp_hoc/capmp.hoc
[1755/1936] Generating example_nmodl/hh1_hoc/hh1.hoc
[1756/1936] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1757/1936] Generating example_nmodl/fh_hoc/fh.hoc
[1758/1936] Generating example_nmodl/gap_hoc/gap.hoc
[1759/1936] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1760/1936] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1761/1936] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1762/1936] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1763/1936] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1764/1936] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1765/1936] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1766/1936] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1767/1936] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1768/1936] Generating example_nmodl/order_hoc/order.hoc
[1769/1936] Generating example_nmodl/syn1_hoc/syn1.hoc
[1770/1936] Generating example_nmodl/synpre_hoc/synpre.hoc
[1771/1936] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1772/1936] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1773/1936] Generating example_nmodl/passiv_hoc/passiv.hoc
[1774/1936] Generating example_nmodl/stim1_hoc/stim1.hoc
[1775/1936] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1776/1936] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1777/1936] Generating example_nmodl/cagkftab_py/cagkftab.py
[1778/1936] Generating example_nmodl/nonlin_py/nonlin.py
[1779/1936] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1780/1936] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1781/1936] Generating example_nmodl/vlag_py/vlag.py
[1782/1936] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1783/1936] Generating example_nmodl/expsynspine_py/expsynspine.py
[1784/1936] Building special[-core] for test group reduced_dentate
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"

MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Aradi_Ca.mod
 -> NMODL .././Aradi_CadepK.mod
 -> NMODL .././Aradi_KA.mod
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././Aradi_KDRf.mod
 -> NMODL .././Aradi_KDRs.mod
 -> NMODL .././Aradi_Na.mod
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././CaBK.mod
 -> NMODL .././DGC_M.mod
 -> NMODL .././DGC_UK.mod
 -> NMODL .././DGC_sAHP.mod
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././LcaMig.mod
 -> NMODL .././Gfluct3.mod
 -> NMODL .././SH_KIn.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
 -> NMODL .././SH_na8st.mod
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././bgka.mod
 -> NMODL .././ccanl.mod
 -> NMODL .././ggap.mod
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././gskch.mod
Translating ggap.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Translating bgka.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././holdingi.mod
 -> NMODL .././hyperde3.mod
 -> NMODL .././ichan2.mod
Translating gskch.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
 -> NMODL .././iconc_Ca.mod
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
Thread Safe
 -> NMODL .././kcaPR.mod
 -> NMODL .././na3n.mod
 -> NMODL .././nca.mod
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
 -> NMODL .././spines.mod
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Thread Safe
Translating na3n.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Translating nca.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
Thread Safe
 -> NMODL .././tca.mod
 -> NMODL .././vecevent.mod
Translating spines.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating tca.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
 -> Compiling /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./special" LDFLAGS are:
Successfully created arm64/special
[1785/1936] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1786/1936] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1787/1936] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1788/1936] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1789/1936] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1790/1936] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1791/1936] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1792/1936] Generating ../../reduced_dentate/neuron/commonutils.py
[1793/1936] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1794/1936] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1795/1936] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1796/1936] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1797/1936] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1798/1936] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1799/1936] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1800/1936] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1801/1936] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1802/1936] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1803/1936] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1804/1936] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1805/1936] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1806/1936] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1807/1936] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1808/1936] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1809/1936] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1810/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1811/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1812/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1813/1936] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1814/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1815/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1816/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1817/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1818/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1819/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1820/1936] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1821/1936] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1822/1936] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1823/1936] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1824/1936] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1825/1936] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1826/1936] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1827/1936] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1828/1936] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1829/1936] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1830/1936] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1831/1936] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1832/1936] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1833/1936] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1834/1936] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1835/1936] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1836/1936] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1837/1936] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1838/1936] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1839/1936] Generating ../../reduced_dentate/neuron/lib.hoc
[1840/1936] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1841/1936] Generating ../../reduced_dentate/neuron/main.hoc
[1842/1936] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1843/1936] Generating ../../reduced_dentate/neuron/run.hoc
[1844/1936] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1845/1936] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1846/1936] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1847/1936] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1848/1936] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1849/1936] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1850/1936] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1851/1936] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1852/1936] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1853/1936] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1854/1936] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1855/1936] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1856/1936] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1857/1936] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1858/1936] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1859/1936] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1860/1936] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1861/1936] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1862/1936] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1863/1936] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1864/1936] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1865/1936] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1866/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1867/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1868/1936] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1869/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1870/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1871/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1872/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1873/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1874/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1875/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1876/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1877/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1878/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1879/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1880/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1881/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1882/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1883/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1884/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1885/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1886/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1887/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1888/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1889/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1890/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1891/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1892/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1893/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1894/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1895/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1896/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1897/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1898/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1899/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1900/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1901/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1902/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1903/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1904/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1905/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1906/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1907/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1908/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1909/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1910/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1911/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1912/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1913/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1914/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1915/1936] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1916/1936] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1917/1936] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1918/1936] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1919/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1920/1936] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1921/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1922/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1923/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1924/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1925/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1926/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1927/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1928/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1929/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1930/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1931/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1932/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1933/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1934/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1935/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
[1936/1936] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Thu Nov 14 09:46:59 2024
Cacheable calls:     622 / 622 (100.0%)
  Hits:                2 / 622 ( 0.32%)
    Direct:            1 /   2 (50.00%)
    Preprocessed:      1 /   2 (50.00%)
  Misses:            620 / 622 (99.68%)
Successful lookups:
  Direct:              1 / 622 ( 0.16%)
  Preprocessed:        1 / 621 ( 0.16%)
Local storage:
  Cache size (GiB):  0.1 / 5.0 ( 2.50%)
  Files:            1172
  Hits:                2 / 622 ( 0.32%)
  Misses:            620 / 622 (99.68%)
  Reads:            1244
  Writes:           1173
[32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m
[32;1m$ cat src/nrnpython/setup.cfg[0;m
[install]
prefix=
[32;1m$ ctest --output-on-failure[0;m
Test project /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build
        Start 243: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 253: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
  1/306 Test #253: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    2.27 sec
        Start 259: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/306 Test #259: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    0.22 sec
        Start 265: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  3/306 Test #265: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    0.23 sec
        Start 277: testcorenrn_kin::coreneuron_cpu_offline::preparation
  4/306 Test #243: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    2.73 sec
        Start 271: testcorenrn_gf::coreneuron_cpu_offline::preparation
  5/306 Test #277: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    0.24 sec
        Start 161: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  6/306 Test #271: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    0.25 sec
        Start 282: testcorenrn_patstim::coreneuron_cpu_offline::preparation
  7/306 Test #161: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.02 sec
        Start 163: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  8/306 Test #163: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.02 sec
        Start 165: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  9/306 Test #165: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.02 sec
        Start 167: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
 10/306 Test #167: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.02 sec
        Start 169: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
 11/306 Test #169: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.02 sec
        Start 171: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
 12/306 Test #171: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.02 sec
        Start 173: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
 13/306 Test #173: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.02 sec
        Start 175: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 14/306 Test #175: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.02 sec
        Start 177: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 15/306 Test #177: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.02 sec
        Start 179: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 16/306 Test #179: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.02 sec
        Start 181: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 17/306 Test #181: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.02 sec
        Start 183: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 18/306 Test #183: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.02 sec
        Start 185: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 19/306 Test #185: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.02 sec
        Start 187: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 20/306 Test #282: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    0.28 sec
        Start 288: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 21/306 Test #187: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.02 sec
        Start 189: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 22/306 Test #189: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.02 sec
        Start 191: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 23/306 Test #191: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.02 sec
        Start 197: pyinit::nrniv_pydef_python_check_sys_path::preparation
 24/306 Test #197: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.02 sec
        Start 199: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 25/306 Test #199: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.02 sec
        Start 201: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 26/306 Test #201: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.02 sec
        Start 203: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 27/306 Test #203: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.03 sec
        Start 205: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 28/306 Test #205: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.02 sec
        Start 207: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 29/306 Test #207: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.02 sec
        Start 209: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 30/306 Test #209: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.02 sec
        Start 211: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 31/306 Test #288: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    0.23 sec
        Start 300: testcorenrn_watch::coreneuron_cpu_offline::preparation
 32/306 Test #211: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.02 sec
        Start 213: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 33/306 Test #213: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.02 sec
        Start 215: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 34/306 Test #215: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.02 sec
        Start 217: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 35/306 Test #217: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.02 sec
        Start 219: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 36/306 Test #219: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.02 sec
        Start 221: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 37/306 Test #221: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.02 sec
        Start 223: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 38/306 Test #223: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.02 sec
        Start 225: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 39/306 Test #225: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.02 sec
        Start 227: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 40/306 Test #227: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.02 sec
        Start 235: external_ringtest::neuron
 41/306 Test #300: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    0.24 sec
        Start 236: external_ringtest::neuron_mpi
 42/306 Test #236: external_ringtest::neuron_mpi ............................................   Passed    8.39 sec
        Start 237: external_ringtest::neuron_mpi_python
 43/306 Test #235: external_ringtest::neuron ................................................   Passed   16.04 sec
        Start 249: testcorenrn_bbcore::neuron
 44/306 Test #249: testcorenrn_bbcore::neuron ...............................................   Passed    0.26 sec
        Start 250: testcorenrn_bbcore::coreneuron_cpu_online
 45/306 Test #250: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    0.50 sec
        Start 251: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 46/306 Test #237: external_ringtest::neuron_mpi_python .....................................   Passed    8.86 sec
        Start 239: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 47/306 Test #251: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    0.57 sec
        Start 252: testcorenrn_bbcore::coreneuron_cpu_offline
 48/306 Test #252: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    0.45 sec
        Start 255: testcorenrn_conc::neuron
 49/306 Test #255: testcorenrn_conc::neuron .................................................   Passed    0.27 sec
        Start 256: testcorenrn_conc::coreneuron_cpu_online
 50/306 Test #256: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    0.51 sec
        Start 257: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 51/306 Test #257: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    0.56 sec
        Start 258: testcorenrn_conc::coreneuron_cpu_offline
 52/306 Test #258: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    0.19 sec
        Start 261: testcorenrn_deriv::neuron
 53/306 Test #239: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    2.09 sec
        Start 240: external_ringtest::coreneuron_cpu_mpi
 54/306 Test #261: testcorenrn_deriv::neuron ................................................   Passed    0.27 sec
        Start 262: testcorenrn_deriv::coreneuron_cpu_online
 55/306 Test #262: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    0.52 sec
        Start 263: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 56/306 Test #240: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    1.27 sec
        Start 241: external_ringtest::coreneuron_cpu_mpi_python
 57/306 Test #263: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    0.57 sec
        Start 264: testcorenrn_deriv::coreneuron_cpu_offline
 58/306 Test #264: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    0.19 sec
        Start 273: testcorenrn_kin::neuron
 59/306 Test #273: testcorenrn_kin::neuron ..................................................   Passed    0.43 sec
        Start 274: testcorenrn_kin::coreneuron_cpu_online
 60/306 Test #274: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    0.52 sec
        Start 275: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 61/306 Test #241: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    1.51 sec
        Start 242: external_ringtest::coreneuron_cpu_mpi_offline
 62/306 Test #275: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    0.55 sec
        Start 276: testcorenrn_kin::coreneuron_cpu_offline
 63/306 Test #276: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    0.19 sec
        Start   1: cmd_interface_test
 64/306 Test #242: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    0.75 sec
        Start 246: external_ringtest::coreneuron_mpi_registermapping_directmode
 65/306 Test   #1: cmd_interface_test .......................................................   Passed    0.82 sec
        Start   2: interleave_info_constructor_test
 66/306 Test   #2: interleave_info_constructor_test .........................................   Passed    0.36 sec
        Start   3: alignment_test
 67/306 Test   #3: alignment_test ...........................................................   Passed    0.35 sec
        Start   4: queuing_test
 68/306 Test   #4: queuing_test .............................................................   Passed    0.35 sec
        Start   5: test-solver
 69/306 Test #246: external_ringtest::coreneuron_mpi_registermapping_directmode .............   Passed    1.61 sec
        Start 247: external_ringtest::coreneuron_mpi_registermapping_filemode
 70/306 Test   #5: test-solver ..............................................................   Passed    0.60 sec
        Start   6: random_test
 71/306 Test   #6: random_test ..............................................................   Passed    0.36 sec
        Start   7: lfp_test
 72/306 Test   #7: lfp_test .................................................................   Passed    0.39 sec
        Start   8: unit_tests::testneuron
 73/306 Test #247: external_ringtest::coreneuron_mpi_registermapping_filemode ...............   Passed    1.50 sec
        Start 267: testcorenrn_gf::neuron
 74/306 Test   #8: unit_tests::testneuron ...................................................   Passed    0.42 sec
        Start   9: unit_tests::testneuron_soa_erase_calls_terminate
 75/306 Test   #9: unit_tests::testneuron_soa_erase_calls_terminate .........................   Passed    0.11 sec
        Start  10: ringtest
 76/306 Test  #10: ringtest .................................................................   Passed    0.69 sec
        Start  11: connect_dend
 77/306 Test  #11: connect_dend .............................................................   Passed    0.17 sec
        Start  12: mpi_init::nrniv_mpiopt
 78/306 Test  #12: mpi_init::nrniv_mpiopt ...................................................   Passed    0.18 sec
        Start  13: mpi_init::nrniv_nrnmpi_init
 79/306 Test  #13: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.19 sec
        Start  14: mpi_init::python_nrnmpi_init
 80/306 Test #267: testcorenrn_gf::neuron ...................................................   Passed    2.09 sec
        Start 268: testcorenrn_gf::coreneuron_cpu_online
 81/306 Test  #14: mpi_init::python_nrnmpi_init .............................................   Passed    0.57 sec
        Start  15: mpi_init::python_mpienv
 82/306 Test  #15: mpi_init::python_mpienv ..................................................   Passed    0.58 sec
        Start  16: mpi_init::nrniv_mpiexec_mpiopt
 83/306 Test #268: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    0.80 sec
        Start 269: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 84/306 Test  #16: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    0.19 sec
        Start  17: mpi_init::nrniv_mpiexec_nrnmpi_init
 85/306 Test  #17: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    0.18 sec
        Start  18: mpi_init::python_mpiexec_nrnmpi_init
 86/306 Test  #18: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    0.66 sec
        Start  19: mpi_init::python_mpiexec_mpienv
 87/306 Test  #19: mpi_init::python_mpiexec_mpienv ..........................................   Passed    0.66 sec
        Start  20: unit_tests::python_unit_tests
 88/306 Test #269: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    2.26 sec
        Start 270: testcorenrn_gf::coreneuron_cpu_offline
 89/306 Test  #20: unit_tests::python_unit_tests ............................................   Passed    0.99 sec
        Start  21: pytest::basic_tests_py3.10
 90/306 Test #270: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    0.35 sec
        Start 279: testcorenrn_patstim::neuron
 91/306 Test #279: testcorenrn_patstim::neuron ..............................................   Passed    0.33 sec
        Start 280: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 92/306 Test  #21: pytest::basic_tests_py3.10 ...............................................   Passed    0.94 sec
        Start  22: pytest_coreneuron::basic_tests_py3.10
 93/306 Test #280: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    0.79 sec
        Start 281: testcorenrn_patstim::coreneuron_cpu_offline
 94/306 Test #281: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    0.19 sec
        Start 284: testcorenrn_vecplay::neuron
 95/306 Test #284: testcorenrn_vecplay::neuron ..............................................   Passed    0.45 sec
        Start 285: testcorenrn_vecplay::coreneuron_cpu_online
 96/306 Test #285: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    0.58 sec
        Start 286: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 97/306 Test #286: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    0.84 sec
        Start 287: testcorenrn_vecplay::coreneuron_cpu_offline
 98/306 Test #287: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    0.22 sec
        Start 296: testcorenrn_watch::neuron
 99/306 Test #296: testcorenrn_watch::neuron ................................................   Passed    0.38 sec
        Start 297: testcorenrn_watch::coreneuron_cpu_online
100/306 Test #297: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    0.54 sec
        Start 298: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
101/306 Test #298: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    0.74 sec
        Start 299: testcorenrn_watch::coreneuron_cpu_offline
102/306 Test #299: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    0.20 sec
        Start 302: testcorenrn_netstimdirect::direct_netstimdirect
103/306 Test  #22: pytest_coreneuron::basic_tests_py3.10 ....................................   Passed    5.03 sec
        Start  23: datahandle::datahandle_tests
104/306 Test #302: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    0.74 sec
        Start 303: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
105/306 Test  #23: datahandle::datahandle_tests .............................................   Passed    1.04 sec
        Start  24: coverage_tests::cover_tests
106/306 Test #303: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    0.93 sec
        Start  25: example_nmodl::ca_ap_hoc
        Start  26: example_nmodl::cabpump_hoc
107/306 Test  #25: example_nmodl::ca_ap_hoc .................................................   Passed    0.55 sec
        Start  27: example_nmodl::cachan_hoc
108/306 Test  #26: example_nmodl::cabpump_hoc ...............................................   Passed    0.60 sec
        Start  28: example_nmodl::cadif_hoc
109/306 Test  #27: example_nmodl::cachan_hoc ................................................   Passed    0.23 sec
        Start  29: example_nmodl::cadifusl_hoc
110/306 Test  #28: example_nmodl::cadif_hoc .................................................   Passed    0.32 sec
        Start  30: example_nmodl::cadifusl1_hoc
111/306 Test  #29: example_nmodl::cadifusl_hoc ..............................................   Passed    0.19 sec
        Start  31: example_nmodl::cadifusl2_hoc
112/306 Test  #24: coverage_tests::cover_tests ..............................................   Passed    1.12 sec
        Start  32: example_nmodl::cagk_hoc
113/306 Test  #30: example_nmodl::cadifusl1_hoc .............................................   Passed    0.21 sec
        Start  33: example_nmodl::capmp_hoc
114/306 Test  #31: example_nmodl::cadifusl2_hoc .............................................   Passed    0.16 sec
        Start  34: example_nmodl::cv_hoc
115/306 Test  #32: example_nmodl::cagk_hoc ..................................................   Passed    0.14 sec
        Start  35: example_nmodl::fh_hoc
116/306 Test  #34: example_nmodl::cv_hoc ....................................................   Passed    0.14 sec
        Start  36: example_nmodl::fit1_hoc
117/306 Test  #35: example_nmodl::fh_hoc ....................................................   Passed    0.14 sec
        Start  37: example_nmodl::gap_hoc
118/306 Test  #33: example_nmodl::capmp_hoc .................................................   Passed    0.26 sec
        Start  38: example_nmodl::hh1_hoc
119/306 Test  #36: example_nmodl::fit1_hoc ..................................................   Passed    0.14 sec
        Start  39: example_nmodl::hhvect_hoc
120/306 Test  #37: example_nmodl::gap_hoc ...................................................   Passed    0.15 sec
        Start  40: example_nmodl::nacum_hoc
121/306 Test  #38: example_nmodl::hh1_hoc ...................................................   Passed    0.15 sec
        Start  41: example_nmodl::nadifl1_hoc
122/306 Test  #39: example_nmodl::hhvect_hoc ................................................   Passed    0.14 sec
        Start  42: example_nmodl::nadifl2_hoc
123/306 Test  #40: example_nmodl::nacum_hoc .................................................   Passed    0.14 sec
        Start  43: example_nmodl::nadifl3_hoc
124/306 Test  #41: example_nmodl::nadifl1_hoc ...............................................   Passed    0.16 sec
        Start  44: example_nmodl::nadifl4_hoc
125/306 Test  #42: example_nmodl::nadifl2_hoc ...............................................   Passed    0.18 sec
        Start  45: example_nmodl::obj_ex_hoc
126/306 Test  #43: example_nmodl::nadifl3_hoc ...............................................   Passed    0.17 sec
        Start  46: example_nmodl::order_hoc
127/306 Test  #44: example_nmodl::nadifl4_hoc ...............................................   Passed    0.17 sec
        Start  47: example_nmodl::passiv_hoc
128/306 Test  #45: example_nmodl::obj_ex_hoc ................................................   Passed    0.14 sec
        Start  48: example_nmodl::stim1_hoc
129/306 Test  #47: example_nmodl::passiv_hoc ................................................   Passed    0.14 sec
        Start  49: example_nmodl::syn1_hoc
130/306 Test  #48: example_nmodl::stim1_hoc .................................................   Passed    0.14 sec
        Start  50: example_nmodl::synpre_hoc
131/306 Test  #46: example_nmodl::order_hoc .................................................   Passed    0.17 sec
        Start  51: example_nmodl::tstextrn_hoc
132/306 Test  #51: example_nmodl::tstextrn_hoc ..............................................   Passed    0.14 sec
        Start  52: example_nmodl::tstpnt1_hoc
133/306 Test  #49: example_nmodl::syn1_hoc ..................................................   Passed    0.15 sec
        Start  53: example_nmodl::tstpnt2_hoc
134/306 Test  #50: example_nmodl::synpre_hoc ................................................   Passed    0.21 sec
        Start  54: example_nmodl::tstvec_hoc
135/306 Test  #53: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.14 sec
        Start  55: example_nmodl::cagkftab_py
136/306 Test  #52: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.14 sec
        Start  56: example_nmodl::expsynspine_py
137/306 Test  #54: example_nmodl::tstvec_hoc ................................................   Passed    0.14 sec
        Start  57: example_nmodl::nonlin_py
138/306 Test  #56: example_nmodl::expsynspine_py ............................................   Passed    0.90 sec
        Start  58: example_nmodl::tstpnt1_py
139/306 Test  #58: example_nmodl::tstpnt1_py ................................................   Passed    0.53 sec
        Start  59: example_nmodl::tstpnt2_py
140/306 Test  #59: example_nmodl::tstpnt2_py ................................................   Passed    0.51 sec
        Start  60: example_nmodl::vlag_py
141/306 Test  #60: example_nmodl::vlag_py ...................................................   Passed    0.53 sec
        Start  61: hoctests::test_loadbal_hoc
142/306 Test  #57: example_nmodl::nonlin_py .................................................   Passed    2.76 sec
        Start  62: hoctests::test_random_hoc
143/306 Test  #61: hoctests::test_loadbal_hoc ...............................................   Passed    0.53 sec
        Start  63: hoctests::perf1_hoc
144/306 Test  #62: hoctests::test_random_hoc ................................................   Passed    0.17 sec
        Start  64: hoctests::test1_hoc
145/306 Test  #64: hoctests::test1_hoc ......................................................   Passed    0.36 sec
        Start  65: hoctests::test2_hoc
146/306 Test  #65: hoctests::test2_hoc ......................................................   Passed    0.23 sec
        Start  66: hoctests::test3_hoc
147/306 Test  #66: hoctests::test3_hoc ......................................................   Passed    0.16 sec
        Start  67: hoctests::test4_hoc
148/306 Test  #67: hoctests::test4_hoc ......................................................   Passed    0.13 sec
        Start  68: hoctests::test5_hoc
149/306 Test  #68: hoctests::test5_hoc ......................................................   Passed    0.13 sec
        Start  69: hoctests::test6_hoc
150/306 Test  #69: hoctests::test6_hoc ......................................................   Passed    0.13 sec
        Start  70: hoctests::test7_hoc
151/306 Test  #70: hoctests::test7_hoc ......................................................   Passed    0.13 sec
        Start  71: hoctests::test8_hoc
152/306 Test  #71: hoctests::test8_hoc ......................................................   Passed    0.14 sec
        Start  72: hoctests::test9_hoc
153/306 Test  #55: example_nmodl::cagkftab_py ...............................................   Passed    4.45 sec
        Start  73: hoctests::test_bbss_py
154/306 Test  #63: hoctests::perf1_hoc ......................................................   Passed    1.48 sec
        Start  74: hoctests::test_cvinterp_py
155/306 Test  #72: hoctests::test9_hoc ......................................................   Passed    0.14 sec
        Start  75: hoctests::test_eion_cover_py
156/306 Test  #73: hoctests::test_bbss_py ...................................................   Passed    0.83 sec
        Start  76: hoctests::test_hocGUI2_py
157/306 Test  #75: hoctests::test_eion_cover_py .............................................   Passed    0.74 sec
        Start  77: hoctests::test_hoc_class_instance_py
158/306 Test  #74: hoctests::test_cvinterp_py ...............................................   Passed    0.81 sec
        Start  78: hoctests::test_hocmech_py
159/306 Test  #77: hoctests::test_hoc_class_instance_py .....................................   Passed    0.62 sec
        Start  79: hoctests::test_kschan_py
160/306 Test  #78: hoctests::test_hocmech_py ................................................   Passed    0.66 sec
        Start  80: hoctests::test_legacy_setpointer_py
161/306 Test  #76: hoctests::test_hocGUI2_py ................................................   Passed    0.69 sec
        Start  81: hoctests::test_mechfunc_py
162/306 Test  #80: hoctests::test_legacy_setpointer_py ......................................   Passed    0.66 sec
        Start  82: hoctests::test_mechstd_py
163/306 Test  #81: hoctests::test_mechfunc_py ...............................................   Passed    0.66 sec
        Start  83: hoctests::test_mode_py
164/306 Test  #79: hoctests::test_kschan_py .................................................   Passed    0.82 sec
        Start  84: hoctests::test_mview_py
165/306 Test  #83: hoctests::test_mode_py ...................................................   Passed    0.76 sec
        Start  85: hoctests::test_neurondemo_py
166/306 Test  #82: hoctests::test_mechstd_py ................................................   Passed    0.80 sec
        Start  86: hoctests::test_nrniv-launch_py
167/306 Test  #86: hoctests::test_nrniv-launch_py ...........................................   Passed    0.40 sec
        Start  87: hoctests::test_optim_node_order_py
168/306 Test  #84: hoctests::test_mview_py ..................................................   Passed    1.14 sec
        Start  88: hoctests::test_random_py
169/306 Test  #85: hoctests::test_neurondemo_py .............................................   Passed    0.52 sec
        Start  89: hoctests::test_secref_py
170/306 Test  #87: hoctests::test_optim_node_order_py .......................................   Passed    0.74 sec
        Start  90: hoctests::test_setdata_py
171/306 Test  #88: hoctests::test_random_py .................................................   Passed    0.72 sec
        Start  91: hoctests::test_shape_py
172/306 Test  #89: hoctests::test_secref_py .................................................   Passed    0.70 sec
        Start  92: hoctests::test_thread_partition_py
173/306 Test  #90: hoctests::test_setdata_py ................................................   Passed    0.58 sec
        Start  93: hoctests::test1_py
174/306 Test  #91: hoctests::test_shape_py ..................................................   Passed    0.72 sec
        Start  94: hoctests::test2_py
175/306 Test  #92: hoctests::test_thread_partition_py .......................................   Passed    0.96 sec
        Start  95: hoctests::test9_py
176/306 Test  #93: hoctests::test1_py .......................................................   Passed    0.76 sec
        Start 101: coreneuron_standalone::test_nrn_corenrn_standalone
177/306 Test  #94: hoctests::test2_py .......................................................   Passed    0.86 sec
        Start 102: nmodl_tests::test_table
178/306 Test  #95: hoctests::test9_py .......................................................   Passed    0.65 sec
        Start 103: nmodl_tests::test_function_table
179/306 Test #101: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed    1.02 sec
        Start 104: nmodl_tests::test_kinetic
180/306 Test #102: nmodl_tests::test_table ..................................................   Passed    1.13 sec
        Start 105: nmodl_tests::test_random
181/306 Test #103: nmodl_tests::test_function_table .........................................   Passed    1.07 sec
        Start 106: nmodl_tests::test_path_spaces
182/306 Test #104: nmodl_tests::test_kinetic ................................................   Passed    1.00 sec
        Start 107: coreneuron_modtests::version_macros
183/306 Test #105: nmodl_tests::test_random .................................................   Passed    0.85 sec
        Start 109: coreneuron_modtests::fornetcon_py_cpu
184/306 Test #106: nmodl_tests::test_path_spaces ............................................   Passed    1.05 sec
        Start 110: coreneuron_modtests::direct_py_cpu
185/306 Test #107: coreneuron_modtests::version_macros ......................................   Passed    1.33 sec
        Start 111: coreneuron_modtests::direct_hoc_cpu
186/306 Test #109: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed    1.16 sec
        Start 112: coreneuron_modtests::spikes_py_cpu
187/306 Test #110: coreneuron_modtests::direct_py_cpu .......................................   Passed    0.98 sec
        Start 113: coreneuron_modtests::spikes_file_mode_py_cpu
188/306 Test #111: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    0.84 sec
        Start 114: coreneuron_modtests::fast_imem_py_cpu
189/306 Test #113: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed    1.02 sec
        Start 115: coreneuron_modtests::datareturn_py_cpu
190/306 Test #112: coreneuron_modtests::spikes_py_cpu .......................................   Passed    1.08 sec
        Start 116: coreneuron_modtests::test_units_py_cpu
191/306 Test #116: coreneuron_modtests::test_units_py_cpu ...................................   Passed    0.94 sec
        Start 117: coreneuron_modtests::test_netmove_py_cpu
192/306 Test #114: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed    1.29 sec
        Start 118: coreneuron_modtests::test_pointer_py_cpu
193/306 Test #115: coreneuron_modtests::datareturn_py_cpu ...................................   Passed    1.48 sec
        Start 119: coreneuron_modtests::test_watchrange_py_cpu
194/306 Test #119: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed    0.85 sec
        Start 120: coreneuron_modtests::test_psolve_py_cpu
195/306 Test #117: coreneuron_modtests::test_netmove_py_cpu .................................   Passed    1.42 sec
        Start 121: coreneuron_modtests::test_ba_py_cpu
196/306 Test #121: coreneuron_modtests::test_ba_py_cpu ......................................   Passed    0.82 sec
        Start 122: coreneuron_modtests::test_nmodlrandom_py_cpu
197/306 Test #120: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed    0.99 sec
        Start 123: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu
198/306 Test #118: coreneuron_modtests::test_pointer_py_cpu .................................   Passed    3.24 sec
        Start 124: coreneuron_modtests::test_natrans_py_cpu
199/306 Test #122: coreneuron_modtests::test_nmodlrandom_py_cpu .............................   Passed    1.30 sec
        Start 125: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu
200/306 Test #124: coreneuron_modtests::test_natrans_py_cpu .................................   Passed    0.96 sec
        Start 126: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu
201/306 Test #125: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu ...........   Passed    1.07 sec
        Start 127: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu
202/306 Test #126: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu ...........   Passed    1.01 sec
        Start 128: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu
203/306 Test #127: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu ...........   Passed    1.02 sec
        Start 131: nmodl_tests_coreneuron::test_table_coreneuron_cpu
204/306 Test #123: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu ......................   Passed    3.52 sec
        Start 132: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
205/306 Test #128: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu ............   Passed    0.94 sec
        Start 133: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
206/306 Test #131: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed    0.93 sec
        Start 134: modlunit_unitstest
207/306 Test #132: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed    0.88 sec
        Start 135: modlunit_hh
208/306 Test #135: modlunit_hh ..............................................................   Passed    0.13 sec
        Start 136: modlunit_stim
209/306 Test #134: modlunit_unitstest .......................................................   Passed    0.31 sec
        Start 137: modlunit_pattern
210/306 Test #136: modlunit_stim ............................................................   Passed    0.09 sec
        Start 138: modlunit_rand
211/306 Test #137: modlunit_pattern .........................................................   Passed    0.09 sec
        Start 139: api::hh_sim_cpp
212/306 Test #138: modlunit_rand ............................................................   Passed    0.08 sec
        Start 140: api::netcon_cpp
213/306 Test #133: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed    0.86 sec
        Start 141: api::sections_cpp
214/306 Test #139: api::hh_sim_cpp ..........................................................   Passed    0.30 sec
        Start 142: api::vclamp_cpp
215/306 Test #140: api::netcon_cpp ..........................................................   Passed    0.52 sec
        Start 143: pyinit::nrniv_script.py
216/306 Test #141: api::sections_cpp ........................................................   Passed    0.56 sec
        Start 144: pyinit::nrniv_script.py_error
217/306 Test #143: pyinit::nrniv_script.py ..................................................   Passed    0.13 sec
        Start 145: pyinit::nrniv_two_scripts.py
218/306 Test #144: pyinit::nrniv_script.py_error ............................................   Passed    0.12 sec
        Start 146: pyinit::nrniv_two_scripts.py_error_check_code
219/306 Test #145: pyinit::nrniv_two_scripts.py .............................................   Passed    0.13 sec
        Start 147: pyinit::nrniv_two_scripts.py_error_check_output
220/306 Test #146: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    0.12 sec
        Start 148: pyinit::nrniv_python_command
221/306 Test #142: api::vclamp_cpp ..........................................................   Passed    0.61 sec
        Start 149: pyinit::nrniv_python_command_error
222/306 Test #147: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    0.12 sec
        Start 150: pyinit::nrniv_python_script.py
223/306 Test #148: pyinit::nrniv_python_command .............................................   Passed    0.13 sec
        Start 151: pyinit::nrniv_python_script.py_error
224/306 Test #149: pyinit::nrniv_python_command_error .......................................   Passed    0.13 sec
        Start 152: pyinit::nrniv_python_command_twice
225/306 Test #150: pyinit::nrniv_python_script.py ...........................................   Passed    0.13 sec
        Start 153: pyinit::nrniv_python_script.py_twice
226/306 Test #151: pyinit::nrniv_python_script.py_error .....................................   Passed    0.13 sec
        Start 154: pyinit::nrniv_python_command_args
227/306 Test #152: pyinit::nrniv_python_command_twice .......................................   Passed    0.13 sec
        Start 155: pyinit::nrniv_python_script.py_args
228/306 Test #153: pyinit::nrniv_python_script.py_twice .....................................   Passed    0.13 sec
        Start 156: pyinit::nrniv_nopython_PythonObject
229/306 Test #154: pyinit::nrniv_python_command_args ........................................   Passed    0.13 sec
        Start 157: pyinit::nrniv_nopython_PythonObject_pyexe
230/306 Test #155: pyinit::nrniv_python_script.py_args ......................................   Passed    0.13 sec
        Start 158: pyinit::nrniv_nopython_PythonObject_pyenv
231/306 Test #156: pyinit::nrniv_nopython_PythonObject ......................................   Passed    0.11 sec
        Start 159: pyinit::nrniv_py3.10_python_command_version_check
232/306 Test #157: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    0.11 sec
        Start 160: pyinit::nrniv_py3.10_python_check_sys_path
233/306 Test #158: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    0.11 sec
        Start 162: pyinit::nrniv_py3.10_nrnpython_check_sys_path
234/306 Test #159: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    0.13 sec
        Start 164: pyinit::nrniv_py3.10_python_check_sys_prefix
235/306 Test #160: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    0.13 sec
        Start 166: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
236/306 Test #162: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    0.13 sec
        Start 168: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
237/306 Test #164: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    0.13 sec
        Start 170: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
238/306 Test #166: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    0.13 sec
        Start 172: pyinit::nrniv_py3.10_python_check_sys_base_prefix
239/306 Test #168: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    0.13 sec
        Start 174: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
240/306 Test #170: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    0.13 sec
        Start 176: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
241/306 Test #172: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    0.13 sec
        Start 178: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
242/306 Test #174: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    0.13 sec
        Start 180: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
243/306 Test #176: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    0.13 sec
        Start 182: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
244/306 Test #178: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    0.13 sec
        Start 184: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
245/306 Test #180: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    0.13 sec
        Start 186: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
246/306 Test #182: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    0.13 sec
        Start 188: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
247/306 Test #184: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    0.13 sec
        Start 190: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
248/306 Test #186: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    0.13 sec
        Start 192: pyinit::nrniv_py3.10_python_command_import_neuron
249/306 Test #188: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    0.13 sec
        Start 193: pyinit::py3.10_command_import_neuron
250/306 Test #190: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    0.13 sec
        Start 194: pyinit::nrniv_py3.10_hoc_command_nrnpython
251/306 Test #194: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    0.31 sec
        Start 195: pyinit::nrniv_pydef_python_command_version_check
252/306 Test #195: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    0.17 sec
        Start 196: pyinit::nrniv_pydef_python_check_sys_path
253/306 Test #192: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    0.62 sec
        Start 198: pyinit::nrniv_pydef_nrnpython_check_sys_path
254/306 Test #196: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    0.13 sec
        Start 200: pyinit::nrniv_pydef_python_check_sys_prefix
255/306 Test #198: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    0.14 sec
        Start 202: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
256/306 Test #193: pyinit::py3.10_command_import_neuron .....................................   Passed    0.68 sec
        Start 204: pyinit::nrniv_pydef_python_check_sys_exec_prefix
257/306 Test #200: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    0.13 sec
        Start 206: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
258/306 Test #202: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    0.13 sec
        Start 208: pyinit::nrniv_pydef_python_check_sys_base_prefix
259/306 Test #204: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    0.13 sec
        Start 210: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
260/306 Test #206: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    0.13 sec
        Start 212: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
261/306 Test #208: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    0.13 sec
        Start 214: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
262/306 Test #210: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    0.13 sec
        Start 216: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
263/306 Test #212: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    0.13 sec
        Start 218: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
264/306 Test #214: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    0.13 sec
        Start 220: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
265/306 Test #216: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    0.13 sec
        Start 222: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
266/306 Test #218: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    0.14 sec
        Start 224: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
267/306 Test #220: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    0.13 sec
        Start 226: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
268/306 Test #222: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    0.13 sec
        Start 228: pyinit::nrniv_pydef_python_command_import_neuron
269/306 Test #224: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    0.13 sec
        Start 229: pyinit::pydef_command_import_neuron
270/306 Test #226: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    0.13 sec
        Start 230: pyinit::nrniv_pydef_hoc_command_nrnpython
271/306 Test #230: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    0.23 sec
        Start 231: external_nrntest
272/306 Test #228: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    0.65 sec
        Start 238: external_ringtest_nrn::optim_node_order
273/306 Test #229: pyinit::pydef_command_import_neuron ......................................   Passed    0.64 sec
        Start 254: testcorenrn_bbcore::compare_results
274/306 Test #254: testcorenrn_bbcore::compare_results ......................................   Passed    0.39 sec
        Start 260: testcorenrn_conc::compare_results
275/306 Test #260: testcorenrn_conc::compare_results ........................................   Passed    0.02 sec
        Start 266: testcorenrn_deriv::compare_results
276/306 Test #266: testcorenrn_deriv::compare_results .......................................   Passed    0.02 sec
        Start 272: testcorenrn_gf::compare_results
277/306 Test #272: testcorenrn_gf::compare_results ..........................................   Passed    0.02 sec
        Start 278: testcorenrn_kin::compare_results
278/306 Test #278: testcorenrn_kin::compare_results .........................................   Passed    0.02 sec
        Start 283: testcorenrn_patstim::compare_results
279/306 Test #283: testcorenrn_patstim::compare_results .....................................   Passed    0.02 sec
        Start 289: testcorenrn_vecplay::compare_results
280/306 Test #289: testcorenrn_vecplay::compare_results .....................................   Passed    0.02 sec
        Start 301: testcorenrn_watch::compare_results
281/306 Test #301: testcorenrn_watch::compare_results .......................................   Passed    0.02 sec
        Start 304: testcorenrn_netstimdirect::compare_results
282/306 Test #304: testcorenrn_netstimdirect::compare_results ...............................   Passed    0.02 sec
283/306 Test #238: external_ringtest_nrn::optim_node_order ..................................   Passed   24.04 sec
        Start  97: parallel::partrans
284/306 Test  #97: parallel::partrans .......................................................   Passed    1.04 sec
        Start  98: parallel::netpar
285/306 Test  #98: parallel::netpar .........................................................   Passed    0.74 sec
        Start  99: parallel::bas
286/306 Test  #99: parallel::bas ............................................................   Passed    2.15 sec
        Start 100: parallel::nrntest_fast
287/306 Test #100: parallel::nrntest_fast ...................................................   Passed    1.34 sec
        Start 108: coreneuron_modtests::inputpresyn_py
288/306 Test #108: coreneuron_modtests::inputpresyn_py ......................................   Passed    0.79 sec
        Start 129: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
289/306 Test #129: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    0.99 sec
        Start 305: tqperf::coreneuron_special
290/306 Test #305: tqperf::coreneuron_special ...............................................   Passed    2.90 sec
        Start 306: tqperf::coreneuron_python
291/306 Test #306: tqperf::coreneuron_python ................................................   Passed    2.43 sec
292/306 Test #231: external_nrntest .........................................................   Passed   47.40 sec
        Start 294: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
293/306 Test #294: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    0.27 sec
        Start 232: reduced_dentate::neuron
294/306 Test #232: reduced_dentate::neuron ..................................................   Passed   40.12 sec
        Start 233: reduced_dentate::coreneuron_cpu
295/306 Test #233: reduced_dentate::coreneuron_cpu ..........................................   Passed   34.35 sec
        Start 244: external_ringtest::coreneuron_cpu_mpi_threads
296/306 Test #244: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    1.26 sec
        Start 245: external_ringtest::coreneuron_cpu_mpi_threads_python
297/306 Test #245: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    1.31 sec
        Start 290: testcorenrn_vecevent::neuron
298/306 Test #290: testcorenrn_vecevent::neuron .............................................   Passed    0.28 sec
        Start 291: testcorenrn_vecevent::coreneuron_cpu_online
299/306 Test #291: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    0.59 sec
        Start 292: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
300/306 Test #292: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    0.66 sec
        Start 293: testcorenrn_vecevent::coreneuron_cpu_offline
301/306 Test #293: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    0.23 sec
        Start  96: parallel::subworld
302/306 Test  #96: parallel::subworld .......................................................   Passed    0.97 sec
        Start 130: coreneuron_modtests::test_subworlds_py_cpu
303/306 Test #130: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    1.25 sec
        Start 234: reduced_dentate::compare_results
        Start 248: external_ringtest::compare_results
        Start 295: testcorenrn_vecevent::compare_results
304/306 Test #234: reduced_dentate::compare_results .........................................   Passed    0.02 sec
305/306 Test #295: testcorenrn_vecevent::compare_results ....................................   Passed    0.02 sec
306/306 Test #248: external_ringtest::compare_results .......................................   Passed    0.02 sec

100% tests passed, 0 tests failed out of 306

Total Test time (real) = 199.19 sec
[32;1m$ cmake --build . --target install[0;m
[0/2] Re-checking globbed directories...
[1/6] Update hh.mod for CoreNEURON compatibility
[2/6] Generating help_data.dat
[3/6] cd /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/6] cd /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/src/nrniv && true
[5/6] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv']})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
KeyError: 'setuptools_scm'
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/tests/test_rxd.json -> /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[5/6] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/args.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/base.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/chrono.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/color.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/compile.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/core.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/format.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/format-inl.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/os.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/ostream.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/printf.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/ranges.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/std.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/fmt/xchar.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-config.cmake
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-config-version.cmake
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-targets.cmake
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-targets-custom.cmake
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/pkgconfig/fmt.pc
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/libnrngnu.a
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/lib/python/neuron
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-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/phase3.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/nrnassrt.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/spconfig.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/runge.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/mech_api.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/mcran4.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/hocparse.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/conventional
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/philox.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/aes.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/array.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/Random123/ars.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/treeset.h
-- Installing: /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/include/cabcode.h
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J1484962" of folder "P238433" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users"
/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capmpr.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"

Creating 'arm64' directory for .o files.

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capmpr.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
 -> [32mCompiling[0m mod_func.cpp
 -> [32mNMODL[0m ../cabpump.mod
 -> [32mNMODL[0m ../cachan1.mod
 -> [32mNMODL[0m ../camchan.mod
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp
Translating camchan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Thread Safe
Thread Safe
 -> [32mNMODL[0m ../capmpr.mod
 -> [32mNMODL[0m ../capump.mod
 -> [32mNMODL[0m ../invlfire.mod
 -> [32mNMODL[0m ../khhchan.mod
Translating capmpr.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capmpr.cpp
Translating capump.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp
NEURON's CVode method ignores conservation
Thread Safe
Thread Safe
Thread Safe
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
 -> [32mNMODL[0m ../nacaex.mod
 -> [32mNMODL[0m ../nachan.mod
 -> [32mNMODL[0m ../release.mod
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp
Translating nachan.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
Thread Safe
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capmpr.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp
 -> [32mCompiling[0m /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp
 => [32mLINKING[0m shared library "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => [32mLINKING[0m executable "/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/./special" LDFLAGS are:
Successfully created arm64/special
NEURON -- VERSION + HEAD (4911707+) 2024-11-14
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022
See http://neuron.yale.edu/neuron/credits

Additional mechanisms from files
 "cabpump.mod" "cachan1.mod" "camchan.mod" "capmpr.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"
[32;1m$ export PATH=${INSTALL_DIR}/bin:${PATH}[0;m
[32;1m$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/[0;m
[32;1m$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then[0;m
[32;1m$ echo --- bin/nrn-enable-sanitizer ---[0;m
--- bin/nrn-enable-sanitizer ---
[32;1m$ cat bin/nrn-enable-sanitizer[0;m
#!/usr/bin/env bash
prefix="${NRNHOME:-/Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/install}"
export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES
export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
if [[ "$1" == "--preload" ]]; then
  shift
  if [[ "$1" == "python" ]]; then
    # nrn-enable-sanitizer --preload python is used in the CI, but for it to
    # work on macOS we need to substitute the real Python binary in place of any
    # shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real
    # binary.
    shift
    DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/0/P238433/J1484962/hpc/cellular/nrn/venv/bin/python "$@"
  else
    DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
  fi
else
  MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
[32;1m$ echo ---[0;m
---
[32;1m$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer[0;m
[32;1m$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"[0;m
[32;1m$ else[0;m
[32;1m$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'[0;m
Python 3.10.13
testAssignmentSlicing (neuron.tests.test_vector.VectorTestCase) ... ok
testBytesize (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok
testEndian (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok
testErrorHandling (neuron.tests.test_vector.VectorTestCase) ... ok
testNegativeIndex (neuron.tests.test_vector.VectorTestCase) ... ok
testNumpyInteraction (neuron.tests.test_vector.VectorTestCase)
Testing numpy.array <=> hoc.Vector interaction ... ok
testPerformance (neuron.tests.test_vector.VectorTestCase)
Test performance of Vector<->list,array ... ok
testSlicing (neuron.tests.test_vector.VectorTestCase) ... ok
testABI (neuron.tests.test_neuron.NeuronTestCase)
Test use of some  Py_LIMITED_API for python3. ... ok
testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ...

Executed "l = range(1000000)".  Elapsed = 0.000011 s
Executed "v = h.Vector(l)".  Elapsed = 0.072222 s
inplace:
Executed "v.from_python(l)".  Elapsed = 0.066876 s
Executed "a = numpy.array(v)".  Elapsed = 0.003450 s
inplace:
Executed "v.to_python(a)".  Elapsed = 0.000839 s
Executed "v2 = h.Vector(a)".  Elapsed = 0.003175 s
inplace:
Executed "v2.from_python(a)".  Elapsed = 0.000810 s
Executed "l2 = list(v2)".  Elapsed = 0.040258 s
inplace:
Executed "v.to_python(l2)".  Elapsed = 0.006903 s
Executed "v2 = h.Vector(a[::-1])".  Elapsed = 0.003158 s
Executed "a2 = numpy.array(v2)".  Elapsed = 0.003345 s
test:  ok
testHClass (neuron.tests.test_neuron.NeuronTestCase)
Test subclass of hoc class. ... ok
testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok
testIterators (neuron.tests.test_neuron.NeuronTestCase)
Test section, segment, mechanism, rangevar iterators. ... ok
testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok
testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase)
First optional arg for Section is name (but name="name" is recommended) ... ok
testSectionCell (neuron.tests.test_neuron.NeuronTestCase)
Section.cell() internally referenced as weakref. ... ok
testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase)
As of v8.0, iteration over a SectionList does not change the cas ... ok
test_newobj_err (neuron.tests.test_neuron.NeuronTestCase)
Test deletion of incompletely constructed objects ... NEURON: generate an error
 near line 1
 ob = new NewObj(1, 2)
                      ^
        NewObj[4].execerror("generate a...")
      NewObj[4].init(0, 2)
    NewObj[3].init(1, 2)
  NewObj[2].execute1("ob = new N...", NewObj[2])
and others
ok
testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax:
    .. code-block::
        python


        h.xpanel('name')
        h.xpanel('name', [0-1])
        h.xpanel()
        h.xpanel(x, y)
        h.xpanel(scroll)
        h.xpanel(scroll, x, y)


Description:


    ``h.xpanel("name")``


    ``h.xpanel("name", [0-1])``
        Title of a new panel. Every
        button, menu, and value between this and a closing ``xpanel()`` command
        with no arguments (or placement args) belongs to this panel.
        If the form is used with a second argument equal to 1, then
        the panel is laid out horizontally. Otherwise the default is vertically.


    ``h.xpanel()``


    ``h.xpanel(x, y)``
        done constructing the panel. so map it to the screen with position
        optionally specified.


    ``h.xpanel(scroll)``


    ``h.xpanel(scroll, x, y)``
        as above but if the first arg is a number, then the value determines
        whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox
        will NOT be used. Scroll = 1 means the panel will be inside a scrollbox.
        Scroll = -1 is the default value and whether or not a scrollbox is used
        is determined by the number of panel items in comparison with the
        value of the panel_scroll property in the nrn.defaults file.


Skipping because NRN_ENABLE_RX3D=False

#NewObj and #Foo in existence 3 6
after del a #NewObj and #Foo in existence 0 0
ok

----------------------------------------------------------------------
Ran 19 tests in 2.036s

OK
[32;1m$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then[0;m
section_end:1731574251:step_script
[0Ksection_start:1731574251:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-1uc/modernize-decref-2-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=arm64 os[0;m=darwin pid[0;m=60535 revision[0;m=43b2dc3d version[0;m=15.4.0
./ccache: found 1738 matching files and directories[0;m
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.[0;m
[32;1mCreated cache[0;m
section_end:1731574254:archive_cache
[0Ksection_start:1731574254:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1731574254:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## spack-setup.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731573816:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731573816:resolve_secrets
[0Ksection_start:1731573816:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor483117298, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484963
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484963_PROD_P2160_CP6_C6
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640224
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M    --job-name=GL_J1484963_PROD_P2160_CP6_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=1 --jobid=2640224 --cpus-per-task=6 --mem=30750M
section_end:1731573818:prepare_executor
[0Ksection_start:1731573818:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1731573823:prepare_script
[0Ksection_start:1731573823:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731573824:get_sources
[0Ksection_start:1731573824:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m
[32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ cat parse_description.py[0;m
import os
import re
import requests
pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
                        os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
                        os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
                       headers={'Accept': 'application/vnd.github.v3+json'})
pr_body = pr_info.json()["body"]
# match something like NEURON_BRANCH=foo/bar
# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
def parse_term(m):
  ref_type = m.group(2).lower()
  is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
  if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
  print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
if pr_body is not None:
  for pr_body_line in pr_body.splitlines():
    if not pr_body_line.startswith('CI_BRANCHES:'): continue
    for config_term in pr_body_line[12:].split(','):
      pat.sub(parse_term, config_term)
[32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m
[32;1m$ else[0;m
[32;1m$ cat input_variables.env[0;m
[32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m
[32;1m$ set -o allexport[0;m
[32;1m$ . input_variables.env[0;m
[32;1m$ set +o allexport[0;m
[32;1m$ unset MODULEPATH[0;m
[32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m
[32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m
[32;1m$ echo Preparing to clone Spack into ${PWD}[0;m
Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963
[32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m
[32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m
Checking out the develop of Spack...
[32;1m$ module load unstable git[0;m
[32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m
Cloning into 'spack'...
Updating files:  15% (1767/11280)
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[32;1m$ export SPACK_ROOT=${PWD}/spack[0;m
[32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m
[32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m
[32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m
[32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m
[32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m
[32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m
[32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484963_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = [email protected]:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://[email protected]/
[32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m
spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=1uc/modernize-decref-2 SPACK_RESOLVED_COMMIT=38753b8b072f3d29f4e8ebe1b92e39957090758f GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=491170723f9ffe6d28e58316d9e2b3e630b799aa NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main
==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=1uc/modernize-decref-2
==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=38753b8b072f3d29f4e8ebe1b92e39957090758f
==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main
==> SPACK: ignoring SPACK_BRANCH=develop
==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master
==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main
==> nmodl: resolved branch master to 16b5f956c3a1bea0a9234b31be74cd86c471f075
==> libsonata-report: resolved branch master to b42e72121c5c299188601f914da0c3f3d0f196ca
==> adding config: packages:neuron:require: '@git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop'
==> adding config: packages:nmodl:require: '@git.16b5f956c3a1bea0a9234b31be74cd86c471f075=develop'
==> adding config: packages:libsonata-report:require: '@git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop'
[32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m
[32;1m$ cat commit-mapping.env[0;m
NEURON_COMMIT=491170723f9ffe6d28e58316d9e2b3e630b799aa
NMODL_COMMIT=16b5f956c3a1bea0a9234b31be74cd86c471f075
LIBSONATA_REPORT_COMMIT=b42e72121c5c299188601f914da0c3f3d0f196ca
[32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m
[32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m
[32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja[0;m
==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spack
==> Installing "patchelf@=0.18.0%gcc@=10.2.1 ldflags="-static-libstdc++ -static-libgcc"  build_system=autotools arch=linux-centos7-x86_64" from a buildcache
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack
==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache
Input spec
--------------------------------
 -   ninja

Concretized
--------------------------------
[e]  omn6mm4a3zsbpbkptvdwxs6kkrh6yafw  [email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake

[32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"[0;m
[32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m
[32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env[0;m
[32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m
section_end:1731573919:step_script
[0Ksection_start:1731573919:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=91563 revision[0;m=58ba2b95 version[0;m=14.2.0
commit-mapping.env: found 1 matching files and directories[0;m
input_variables.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1484963 responseStatus[0;m=201 Created token[0;m=glcbt-64
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=91586 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1484963 responseStatus[0;m=201 Created token[0;m=glcbt-64
section_end:1731573921:upload_artifacts_on_success
[0Ksection_start:1731573921:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1731573922:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## test-neuron-nmodl-intel-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1731575358:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1731575358:resolve_secrets
[0Ksection_start:1731575358:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2978856304, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 238433, build ref , job ID 1484971
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1484971_PROD_P2160_CP3_C3
Job parameters: memory=160G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2640269
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=160G    --job-name=GL_J1484971_PROD_P2160_CP3_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=16 --jobid=2640269 --cpus-per-task=1 --mem=160G
section_end:1731575360:prepare_executor
[0Ksection_start:1731575360:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n31 via bbpv1.epfl.ch...
section_end:1731575364:prepare_script
[0Ksection_start:1731575364:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1731575366:get_sources
[0Ksection_start:1731575366:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:neuron:nmodl:intel:legacy (1484965)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=277094 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1484965 responseStatus[0;m=200 OK token[0;m=glcbt-64
section_end:1731575367:download_artifacts
[0Ksection_start:1731575367:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
[32;1m$ i_am_a_failure=0[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1[0;m
   Site: r1i7n31
   Build name: Linux-icpx
Create new tag: 20241114-0910 - Experimental
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-build/spack-stage-neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-svpklazwkxgm7w6ovkmetxh753zupkc6/spack-build-svpklaz
        Start 291: olfactory-bulb-3d::neuron::preparation
        Start 293: olfactory-bulb-3d::coreneuron_cpu_online::preparation
        Start 159: pyinit::nrniv_py3.11_python_check_sys_path::preparation
        Start 161: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation
        Start 163: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation
        Start 165: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation
        Start 167: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation
        Start 169: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation
        Start 171: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation
        Start 173: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation
  1/294 Test #291: olfactory-bulb-3d::neuron::preparation .............................................   Passed    0.19 sec
        Start 175: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation
        Start 177: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation
        Start 179: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation
        Start 181: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation
  2/294 Test #293: olfactory-bulb-3d::coreneuron_cpu_online::preparation ..............................   Passed    0.21 sec
        Start 183: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation
        Start 185: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation
        Start 187: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation
        Start 189: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation
  3/294 Test #165: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation .......................   Passed    0.82 sec
        Start 195: pyinit::nrniv_pydef_python_check_sys_path::preparation
  4/294 Test #159: pyinit::nrniv_py3.11_python_check_sys_path::preparation ............................   Passed    0.84 sec
        Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
  5/294 Test #161: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation .........................   Passed    0.85 sec
        Start 199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
  6/294 Test #171: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation .....................   Passed    0.84 sec
        Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
  7/294 Test #173: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation ..................   Passed    0.84 sec
        Start 203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
  8/294 Test #163: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation ..........................   Passed    0.87 sec
        Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
  9/294 Test #167: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation .....................   Passed    0.87 sec
        Start 207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 10/294 Test #169: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation ..................   Passed    0.89 sec
        Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 11/294 Test #175: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation ................   Passed    0.96 sec
        Start 211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 12/294 Test #183: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation ..................   Passed    0.95 sec
        Start 213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 13/294 Test #177: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation .............   Passed    0.98 sec
        Start 215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 14/294 Test #181: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation ..............   Passed    0.98 sec
        Start 217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 15/294 Test #179: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation .................   Passed    0.99 sec
        Start 219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 16/294 Test #187: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation .................   Passed    0.98 sec
        Start 221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 17/294 Test #185: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation ...............   Passed    0.99 sec
        Start 223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 18/294 Test #189: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation ..............   Passed    1.01 sec
        Start 225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 19/294 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ..........................   Passed    1.00 sec
        Start 233: external_ringtest::neuron
 20/294 Test #199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ...........................   Passed    1.01 sec
        Start 244: testcorenrn_bbcore::neuron
 21/294 Test #195: pyinit::nrniv_pydef_python_check_sys_path::preparation .............................   Passed    1.04 sec
        Start 245: testcorenrn_bbcore::coreneuron_cpu_online
 22/294 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ........................   Passed    1.03 sec
        Start 246: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 23/294 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ...................   Passed    1.02 sec
        Start 248: testcorenrn_conc::neuron
 24/294 Test #207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ......................   Passed    1.03 sec
        Start 249: testcorenrn_conc::coreneuron_cpu_online
 25/294 Test #203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ......................   Passed    1.08 sec
        Start 250: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 26/294 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ...................   Passed    1.07 sec
        Start 252: testcorenrn_deriv::neuron
 27/294 Test #211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .................   Passed    0.97 sec
        Start 253: testcorenrn_deriv::coreneuron_cpu_online
 28/294 Test #215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ..................   Passed    1.01 sec
        Start 254: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 29/294 Test #213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ..............   Passed    1.03 sec
        Start 260: testcorenrn_kin::neuron
 30/294 Test #217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ...............   Passed    1.02 sec
        Start 261: testcorenrn_kin::coreneuron_cpu_online
 31/294 Test #221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ................   Passed    1.00 sec
        Start 262: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 32/294 Test #223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ..................   Passed    1.00 sec
        Start 282: channel_benchmark_hippo::neuron
 33/294 Test #219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ...................   Passed    1.06 sec
        Start 283: channel_benchmark_hippo::coreneuron_cpu_online
 34/294 Test #225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ...............   Passed    1.02 sec
        Start 284: channel_benchmark_hippo::coreneuron_cpu_filemode
 35/294 Test #233: external_ringtest::neuron ..........................................................   Passed    3.94 sec
        Start 286: channel_benchmark_sscx::neuron
 36/294 Test #248: testcorenrn_conc::neuron ...........................................................   Passed    4.18 sec
        Start 287: channel_benchmark_sscx::coreneuron_cpu_online
 37/294 Test #245: testcorenrn_bbcore::coreneuron_cpu_online ..........................................   Passed    5.33 sec
        Start 288: channel_benchmark_sscx::coreneuron_cpu_filemode
 38/294 Test #252: testcorenrn_deriv::neuron ..........................................................   Passed    5.28 sec
        Start   1: cmd_interface_test
 39/294 Test   #1: cmd_interface_test .................................................................   Passed    0.03 sec
        Start   2: interleave_info_constructor_test
 40/294 Test   #2: interleave_info_constructor_test ...................................................   Passed    0.03 sec
        Start   3: alignment_test
 41/294 Test   #3: alignment_test .....................................................................   Passed    0.03 sec
        Start   4: queuing_test
 42/294 Test   #4: queuing_test .......................................................................   Passed    0.03 sec
        Start   5: test-solver
 43/294 Test   #5: test-solver ........................................................................   Passed    0.06 sec
        Start   6: random_test
 44/294 Test   #6: random_test ........................................................................   Passed    0.03 sec
        Start   7: unit_tests::testneuron
 45/294 Test #244: testcorenrn_bbcore::neuron .........................................................   Passed    5.61 sec
        Start   8: unit_tests::testneuron_soa_erase_calls_terminate
 46/294 Test   #7: unit_tests::testneuron .............................................................   Passed    0.10 sec
        Start   9: ringtest
 47/294 Test   #8: unit_tests::testneuron_soa_erase_calls_terminate ...................................   Passed    0.10 sec
        Start  10: connect_dend
 48/294 Test #260: testcorenrn_kin::neuron ............................................................   Passed    5.46 sec
        Start  11: mpi_init::nrniv_mpiopt
 49/294 Test #249: testcorenrn_conc::coreneuron_cpu_online ............................................   Passed    5.77 sec
        Start  12: mpi_init::nrniv_nrnmpi_init
 50/294 Test #246: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate .........................   Passed    5.95 sec
        Start  13: mpi_init::python_nrnmpi_init
 51/294 Test  #11: mpi_init::nrniv_mpiopt .............................................................   Passed    0.20 sec
        Start  14: mpi_init::python_mpienv
 52/294 Test  #10: connect_dend .......................................................................   Passed    0.27 sec
        Start  15: mpi_init::nrniv_mpiexec_mpiopt
 53/294 Test   #9: ringtest ...........................................................................   Passed    0.33 sec
        Start  16: mpi_init::nrniv_mpiexec_nrnmpi_init
 54/294 Test  #12: mpi_init::nrniv_nrnmpi_init ........................................................   Passed    0.22 sec
        Start  17: mpi_init::python_mpiexec_nrnmpi_init
 55/294 Test #253: testcorenrn_deriv::coreneuron_cpu_online ...........................................   Passed    5.88 sec
        Start  18: mpi_init::python_mpiexec_mpienv
 56/294 Test #261: testcorenrn_kin::coreneuron_cpu_online .............................................   Passed    5.91 sec
        Start  19: unit_tests::python_unit_tests
 57/294 Test #250: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ...........................   Passed    6.22 sec
        Start  20: pytest::basic_tests_py3.11
 58/294 Test #254: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ..........................   Passed    6.02 sec
        Start  21: pytest_coreneuron::basic_tests_py3.11
 59/294 Test #262: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............................   Passed    6.04 sec
        Start  22: datahandle::datahandle_tests
 60/294 Test  #14: mpi_init::python_mpienv ............................................................   Passed    0.97 sec
        Start  23: coverage_tests::cover_tests
 61/294 Test  #13: mpi_init::python_nrnmpi_init .......................................................   Passed    1.04 sec
        Start  24: example_nmodl::ca_ap_hoc
 62/294 Test  #24: example_nmodl::ca_ap_hoc ...........................................................   Passed    1.27 sec
        Start  25: example_nmodl::cabpump_hoc
 63/294 Test  #16: mpi_init::nrniv_mpiexec_nrnmpi_init ................................................   Passed    3.48 sec
        Start  26: example_nmodl::cachan_hoc
 64/294 Test  #25: example_nmodl::cabpump_hoc .........................................................   Passed    1.21 sec
        Start  27: example_nmodl::cadif_hoc
 65/294 Test  #15: mpi_init::nrniv_mpiexec_mpiopt .....................................................   Passed    3.72 sec
        Start  28: example_nmodl::cadifusl_hoc
 66/294 Test  #26: example_nmodl::cachan_hoc ..........................................................   Passed    0.49 sec
        Start  29: example_nmodl::cadifusl1_hoc
 67/294 Test  #28: example_nmodl::cadifusl_hoc ........................................................   Passed    0.51 sec
        Start  30: example_nmodl::cadifusl2_hoc
 68/294 Test  #27: example_nmodl::cadif_hoc ...........................................................   Passed    0.79 sec
        Start  31: example_nmodl::cagk_hoc
 69/294 Test  #29: example_nmodl::cadifusl1_hoc .......................................................   Passed    0.81 sec
        Start  32: example_nmodl::capmp_hoc
 70/294 Test  #30: example_nmodl::cadifusl2_hoc .......................................................   Passed    0.60 sec
        Start  33: example_nmodl::cv_hoc
 71/294 Test  #31: example_nmodl::cagk_hoc ............................................................   Passed    0.54 sec
        Start  34: example_nmodl::fh_hoc
 72/294 Test  #17: mpi_init::python_mpiexec_nrnmpi_init ...............................................   Passed    5.02 sec
        Start  35: example_nmodl::fit1_hoc
 73/294 Test  #32: example_nmodl::capmp_hoc ...........................................................   Passed    0.48 sec
        Start  36: example_nmodl::gap_hoc
 74/294 Test  #33: example_nmodl::cv_hoc ..............................................................   Passed    0.49 sec
        Start  37: example_nmodl::hh1_hoc
 75/294 Test  #18: mpi_init::python_mpiexec_mpienv ....................................................   Passed    5.20 sec
        Start  38: example_nmodl::hhvect_hoc
 76/294 Test  #34: example_nmodl::fh_hoc ..............................................................   Passed    0.51 sec
        Start  39: example_nmodl::nacum_hoc
 77/294 Test  #35: example_nmodl::fit1_hoc ............................................................   Passed    0.62 sec


## test-neuron-nmodl-intel-shared.txt

      
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## test-neuron-nmodl-nvhpc-acc-legacy.txt

      
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## test-neuron-nmodl-nvhpc-acc-shared.txt

      
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## test-neuron-nmodl-nvhpc-omp-legacy.txt

      
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## test-neuron-nmodl-nvhpc-omp.txt

      
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              test-neuron-nmodl-nvhpc-omp.txt
            
          
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	[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1731573816:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1731573816:resolve_secrets [0Ksection_start:1731573816:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor483117298, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
	Runner ID 29, project root hpc, project name nrn
	Pipeline ID 238433, build ref , job ID 1484963
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
	A slurm job will be created with name GL_J1484963_PROD_P2160_CP6_C6
	Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
	Not executing the chown -R
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 2640224
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1484963_PROD_P2160_CP6_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=1 --jobid=2640224 --cpus-per-task=6 --mem=30750M
	section_end:1731573818:prepare_executor [0Ksection_start:1731573818:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Using git from spack modules
	Running on r1i7n21 via bbpv1.epfl.ch...
	section_end:1731573823:prepare_script [0Ksection_start:1731573823:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	Using git from spack modules
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1731573824:get_sources [0Ksection_start:1731573824:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	Using git from spack modules
	[32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m
	[32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m
	[32;1m$ cat parse_description.py[0;m
	import os
	import re
	import requests
	pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
	os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
	os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
	headers={'Accept': 'application/vnd.github.v3+json'})
	pr_body = pr_info.json()["body"]
	# match something like NEURON_BRANCH=foo/bar
	# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
	pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
	def parse_term(m):
	ref_type = m.group(2).lower()
	is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
	if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
	print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
	if pr_body is not None:
	for pr_body_line in pr_body.splitlines():
	if not pr_body_line.startswith('CI_BRANCHES:'): continue
	for config_term in pr_body_line[12:].split(','):
	pat.sub(parse_term, config_term)
	[32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m
	[32;1m$ else[0;m
	[32;1m$ cat input_variables.env[0;m
	[32;1m$ for var_to_unset in $(sed 's/^\(.\?\)_\(BRANCH\\|COMMIT\\|TAG\)=.$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m
	[32;1m$ set -o allexport[0;m
	[32;1m$ . input_variables.env[0;m
	[32;1m$ set +o allexport[0;m
	[32;1m$ unset MODULEPATH[0;m
	[32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m
	[32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m
	[32;1m$ echo Preparing to clone Spack into ${PWD}[0;m
	Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484963
	[32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" \|\| -n "${SPACK_TAG}" ) ]]; then[0;m
	[32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m
	Checking out the develop of Spack...
	[32;1m$ module load unstable git[0;m
	[32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m
	Cloning into 'spack'...
	Updating files: 15% (1767/11280) Updating files: 16% (1805/11280) Updating files: 17% (1918/11280) Updating files: 18% (2031/11280) Updating files: 19% (2144/11280) Updating files: 20% (2256/11280) Updating files: 21% (2369/11280) Updating files: 22% (2482/11280) Updating files: 23% (2595/11280) Updating files: 24% (2708/11280) Updating files: 25% (2820/11280) Updating files: 26% (2933/11280) Updating files: 27% (3046/11280) Updating files: 27% (3124/11280) Updating files: 28% (3159/11280) Updating files: 29% (3272/11280) Updating files: 30% (3384/11280) Updating files: 31% (3497/11280) Updating files: 32% (3610/11280) Updating files: 33% (3723/11280) Updating files: 34% (3836/11280) Updating files: 35% (3948/11280) Updating files: 36% (4061/11280) Updating files: 37% (4174/11280) Updating files: 38% (4287/11280) Updating files: 39% (4400/11280) Updating files: 40% (4512/11280) Updating files: 41% (4625/11280) Updating files: 41% (4701/11280) Updating files: 42% (4738/11280) Updating files: 43% (4851/11280) Updating files: 44% (4964/11280) Updating files: 45% (5076/11280) Updating files: 46% (5189/11280) Updating files: 47% (5302/11280) Updating files: 48% (5415/11280) Updating files: 49% (5528/11280) Updating files: 50% (5640/11280) Updating files: 51% (5753/11280) Updating files: 52% (5866/11280) Updating files: 53% (5979/11280) Updating files: 54% (6092/11280) Updating files: 54% (6182/11280) Updating files: 55% (6204/11280) Updating files: 56% (6317/11280) Updating files: 57% (6430/11280) Updating files: 58% (6543/11280) Updating files: 59% (6656/11280) Updating files: 60% (6768/11280) Updating files: 61% (6881/11280) Updating files: 62% (6994/11280) Updating files: 63% (7107/11280) Updating files: 64% (7220/11280) Updating files: 65% (7332/11280) Updating files: 66% (7445/11280) Updating files: 66% (7545/11280) Updating files: 67% (7558/11280) Updating files: 68% (7671/11280) Updating files: 69% (7784/11280) Updating files: 70% (7896/11280) Updating files: 71% (8009/11280) Updating files: 72% (8122/11280) Updating files: 73% (8235/11280) Updating files: 74% (8348/11280) Updating files: 75% (8460/11280) Updating files: 75% (8506/11280) Updating files: 76% (8573/11280) Updating files: 77% (8686/11280) Updating files: 78% (8799/11280) Updating files: 79% (8912/11280) Updating files: 80% (9024/11280) Updating files: 81% (9137/11280) Updating files: 82% (9250/11280) Updating files: 83% (9363/11280) Updating files: 83% (9444/11280) Updating files: 84% (9476/11280) Updating files: 85% (9588/11280) Updating files: 86% (9701/11280) Updating files: 87% (9814/11280) Updating files: 88% (9927/11280) Updating files: 89% (10040/11280) Updating files: 90% (10152/11280) Updating files: 91% (10265/11280) Updating files: 92% (10378/11280) Updating files: 93% (10491/11280) Updating files: 94% (10604/11280) Updating files: 94% (10710/11280) Updating files: 95% (10716/11280) Updating files: 96% (10829/11280) Updating files: 97% (10942/11280) Updating files: 98% (11055/11280) Updating files: 99% (11168/11280) Updating files: 100% (11280/11280) Updating files: 100% (11280/11280), done.
	[32;1m$ export SPACK_ROOT=${PWD}/spack[0;m
	[32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m
	[32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m
	[32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m
	[32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m
	[32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m
	[32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m
	[32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
	[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access [email protected] (${XDG_CONFIG_HOME})"[0;m
	Configuring git to use CI_JOB_TOKEN to access [email protected] (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433/J1484963_local_config)
	[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
	[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = [email protected]:" > "${XDG_CONFIG_HOME}/git/config"[0;m
	[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://[email protected]/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
	[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
	[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
	insteadOf = [email protected]:
	[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
	insteadOf = ssh://[email protected]/
	[32;1m$ env -0 \| sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\\|COMMIT\\|TAG\)=.\+/p' \| xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m
	spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=1uc/modernize-decref-2 SPACK_RESOLVED_COMMIT=38753b8b072f3d29f4e8ebe1b92e39957090758f GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=491170723f9ffe6d28e58316d9e2b3e630b799aa NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main
	==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=1uc/modernize-decref-2
	==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=38753b8b072f3d29f4e8ebe1b92e39957090758f
	==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main
	==> SPACK: ignoring SPACK_BRANCH=develop
	==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master
	==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main
	==> nmodl: resolved branch master to 16b5f956c3a1bea0a9234b31be74cd86c471f075
	==> libsonata-report: resolved branch master to b42e72121c5c299188601f914da0c3f3d0f196ca
	==> adding config: packages:neuron:require: '@git.491170723f9ffe6d28e58316d9e2b3e630b799aa=develop'
	==> adding config: packages:nmodl:require: '@git.16b5f956c3a1bea0a9234b31be74cd86c471f075=develop'
	==> adding config: packages:libsonata-report:require: '@git.b42e72121c5c299188601f914da0c3f3d0f196ca=develop'
	[32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m
	[32;1m$ cat commit-mapping.env[0;m
	NEURON_COMMIT=491170723f9ffe6d28e58316d9e2b3e630b799aa
	NMODL_COMMIT=16b5f956c3a1bea0a9234b31be74cd86c471f075
	LIBSONATA_REPORT_COMMIT=b42e72121c5c299188601f914da0c3f3d0f196ca
	[32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m
	[32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m
	[32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m
	[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja[0;m
	==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0
	==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spec.json
	==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spack
	==> Installing "patchelf@=0.18.0%gcc@=10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache
	==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json
	==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack
	==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache
	Input spec
	--------------------------------
	- ninja

	Concretized
	--------------------------------
	[e] omn6mm4a3zsbpbkptvdwxs6kkrh6yafw [email protected]%[email protected]+re2c build_system=generic arch=linux-rhel7-skylake

	[32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m
	[32;1m$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"[0;m
	[32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m
	[32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env[0;m
	[32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m
	section_end:1731573919:step_script [0Ksection_start:1731573919:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
	Using git from spack modules
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=91563 revision[0;m=58ba2b95 version[0;m=14.2.0
	commit-mapping.env: found 1 matching files and directories[0;m
	input_variables.env: found 1 matching files and directories[0;m
	spack_clone_variables.env: found 1 matching files and directories[0;m
	Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1484963 responseStatus[0;m=201 Created token[0;m=glcbt-64
	[32;1mUploading artifacts...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=91586 revision[0;m=58ba2b95 version[0;m=14.2.0
	spack_clone_variables.env: found 1 matching files and directories[0;m
	Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1484963 responseStatus[0;m=201 Created token[0;m=glcbt-64
	section_end:1731573921:upload_artifacts_on_success [0Ksection_start:1731573921:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
	Using git from spack modules
	section_end:1731573922:cleanup_file_variables [0K[32;1mJob succeeded[0;m
	[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1731575358:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1731575358:resolve_secrets [0Ksection_start:1731575358:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2978856304, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
	Runner ID 29, project root hpc, project name nrn
	Pipeline ID 238433, build ref , job ID 1484971
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag , optional reservation flag
	A slurm job will be created with name GL_J1484971_PROD_P2160_CP3_C3
	Job parameters: memory=160G, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=16 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
	Not executing the chown -R
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 2640269
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=16 --cpus-per-task=1 --mem=160G --job-name=GL_J1484971_PROD_P2160_CP3_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P238433 --ntasks=16 --jobid=2640269 --cpus-per-task=1 --mem=160G
	section_end:1731575360:prepare_executor [0Ksection_start:1731575360:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Using git from spack modules
	Running on r1i7n31 via bbpv1.epfl.ch...
	section_end:1731575364:prepare_script [0Ksection_start:1731575364:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	Using git from spack modules
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1731575366:get_sources [0Ksection_start:1731575366:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m
	Using git from spack modules
	[32;1mDownloading artifacts for build:neuron:nmodl:intel:legacy (1484965)...[0;m
	Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=277094 revision[0;m=58ba2b95 version[0;m=14.2.0
	Downloading artifacts from coordinator... ok [0;m id[0;m=1484965 responseStatus[0;m=200 OK token[0;m=glcbt-64
	section_end:1731575367:download_artifacts [0Ksection_start:1731575367:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	Using git from spack modules
	[32;1m$ env -0 \| sort -z \| xargs -0 -L 1 echo > initial_environment.env[0;m
	[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m
	[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
	[32;1m$ cd ${SPACK_BUILD_DIR}[0;m
	[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m
	[32;1m$ i_am_a_failure=0[0;m
	[32;1m$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test \|\| i_am_a_failure=1[0;m
	Site: r1i7n31
	Build name: Linux-icpx
	Create new tag: 20241114-0910 - Experimental
	Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P238433/J1484965/spack-build/spack-stage-neuron-git.491170723f9ffe6d28e58316d9e2b3e630b799aa_develop-svpklazwkxgm7w6ovkmetxh753zupkc6/spack-build-svpklaz
	Start 291: olfactory-bulb-3d::neuron::preparation
	Start 293: olfactory-bulb-3d::coreneuron_cpu_online::preparation
	Start 159: pyinit::nrniv_py3.11_python_check_sys_path::preparation
	Start 161: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation
	Start 163: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation
	Start 165: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation
	Start 167: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation
	Start 169: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation
	Start 171: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation
	Start 173: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation
	1/294 Test #291: olfactory-bulb-3d::neuron::preparation ............................................. Passed 0.19 sec
	Start 175: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation
	Start 177: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation
	Start 179: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation
	Start 181: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation
	2/294 Test #293: olfactory-bulb-3d::coreneuron_cpu_online::preparation .............................. Passed 0.21 sec
	Start 183: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation
	Start 185: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation
	Start 187: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation
	Start 189: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation
	3/294 Test #165: pyinit::nrniv_py3.11_nrnpython_check_sys_prefix::preparation ....................... Passed 0.82 sec
	Start 195: pyinit::nrniv_pydef_python_check_sys_path::preparation
	4/294 Test #159: pyinit::nrniv_py3.11_python_check_sys_path::preparation ............................ Passed 0.84 sec
	Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
	5/294 Test #161: pyinit::nrniv_py3.11_nrnpython_check_sys_path::preparation ......................... Passed 0.85 sec
	Start 199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
	6/294 Test #171: pyinit::nrniv_py3.11_python_check_sys_base_prefix::preparation ..................... Passed 0.84 sec
	Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
	7/294 Test #173: pyinit::nrniv_py3.11_nrnpython_check_sys_base_prefix::preparation .................. Passed 0.84 sec
	Start 203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
	8/294 Test #163: pyinit::nrniv_py3.11_python_check_sys_prefix::preparation .......................... Passed 0.87 sec
	Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
	9/294 Test #167: pyinit::nrniv_py3.11_python_check_sys_exec_prefix::preparation ..................... Passed 0.87 sec
	Start 207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
	10/294 Test #169: pyinit::nrniv_py3.11_nrnpython_check_sys_exec_prefix::preparation .................. Passed 0.89 sec
	Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
	11/294 Test #175: pyinit::nrniv_py3.11_python_check_sys_base_exec_prefix::preparation ................ Passed 0.96 sec
	Start 211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
	12/294 Test #183: pyinit::nrniv_py3.11_python_check_sys_stdin.encoding::preparation .................. Passed 0.95 sec
	Start 213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
	13/294 Test #177: pyinit::nrniv_py3.11_nrnpython_check_sys_base_exec_prefix::preparation ............. Passed 0.98 sec
	Start 215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
	14/294 Test #181: pyinit::nrniv_py3.11_nrnpython_check_sys_stderr.encoding::preparation .............. Passed 0.98 sec
	Start 217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
	15/294 Test #179: pyinit::nrniv_py3.11_python_check_sys_stderr.encoding::preparation ................. Passed 0.99 sec
	Start 219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
	16/294 Test #187: pyinit::nrniv_py3.11_python_check_sys_stdout.encoding::preparation ................. Passed 0.98 sec
	Start 221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
	17/294 Test #185: pyinit::nrniv_py3.11_nrnpython_check_sys_stdin.encoding::preparation ............... Passed 0.99 sec
	Start 223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
	18/294 Test #189: pyinit::nrniv_py3.11_nrnpython_check_sys_stdout.encoding::preparation .............. Passed 1.01 sec
	Start 225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
	19/294 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation .......................... Passed 1.00 sec
	Start 233: external_ringtest::neuron
	20/294 Test #199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ........................... Passed 1.01 sec
	Start 244: testcorenrn_bbcore::neuron
	21/294 Test #195: pyinit::nrniv_pydef_python_check_sys_path::preparation ............................. Passed 1.04 sec
	Start 245: testcorenrn_bbcore::coreneuron_cpu_online
	22/294 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ........................ Passed 1.03 sec
	Start 246: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
	23/294 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ................... Passed 1.02 sec
	Start 248: testcorenrn_conc::neuron
	24/294 Test #207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ...................... Passed 1.03 sec
	Start 249: testcorenrn_conc::coreneuron_cpu_online
	25/294 Test #203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ...................... Passed 1.08 sec
	Start 250: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
	26/294 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ................... Passed 1.07 sec
	Start 252: testcorenrn_deriv::neuron
	27/294 Test #211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ................. Passed 0.97 sec
	Start 253: testcorenrn_deriv::coreneuron_cpu_online
	28/294 Test #215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation .................. Passed 1.01 sec
	Start 254: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
	29/294 Test #213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .............. Passed 1.03 sec
	Start 260: testcorenrn_kin::neuron
	30/294 Test #217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ............... Passed 1.02 sec
	Start 261: testcorenrn_kin::coreneuron_cpu_online
	31/294 Test #221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ................ Passed 1.00 sec
	Start 262: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
	32/294 Test #223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation .................. Passed 1.00 sec
	Start 282: channel_benchmark_hippo::neuron
	33/294 Test #219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ................... Passed 1.06 sec
	Start 283: channel_benchmark_hippo::coreneuron_cpu_online
	34/294 Test #225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ............... Passed 1.02 sec
	Start 284: channel_benchmark_hippo::coreneuron_cpu_filemode
	35/294 Test #233: external_ringtest::neuron .......................................................... Passed 3.94 sec
	Start 286: channel_benchmark_sscx::neuron
	36/294 Test #248: testcorenrn_conc::neuron ........................................................... Passed 4.18 sec
	Start 287: channel_benchmark_sscx::coreneuron_cpu_online
	37/294 Test #245: testcorenrn_bbcore::coreneuron_cpu_online .......................................... Passed 5.33 sec
	Start 288: channel_benchmark_sscx::coreneuron_cpu_filemode
	38/294 Test #252: testcorenrn_deriv::neuron .......................................................... Passed 5.28 sec
	Start 1: cmd_interface_test
	39/294 Test #1: cmd_interface_test ................................................................. Passed 0.03 sec
	Start 2: interleave_info_constructor_test
	40/294 Test #2: interleave_info_constructor_test ................................................... Passed 0.03 sec
	Start 3: alignment_test
	41/294 Test #3: alignment_test ..................................................................... Passed 0.03 sec
	Start 4: queuing_test
	42/294 Test #4: queuing_test ....................................................................... Passed 0.03 sec
	Start 5: test-solver
	43/294 Test #5: test-solver ........................................................................ Passed 0.06 sec
	Start 6: random_test
	44/294 Test #6: random_test ........................................................................ Passed 0.03 sec
	Start 7: unit_tests::testneuron
	45/294 Test #244: testcorenrn_bbcore::neuron ......................................................... Passed 5.61 sec
	Start 8: unit_tests::testneuron_soa_erase_calls_terminate
	46/294 Test #7: unit_tests::testneuron ............................................................. Passed 0.10 sec
	Start 9: ringtest
	47/294 Test #8: unit_tests::testneuron_soa_erase_calls_terminate ................................... Passed 0.10 sec
	Start 10: connect_dend
	48/294 Test #260: testcorenrn_kin::neuron ............................................................ Passed 5.46 sec
	Start 11: mpi_init::nrniv_mpiopt
	49/294 Test #249: testcorenrn_conc::coreneuron_cpu_online ............................................ Passed 5.77 sec
	Start 12: mpi_init::nrniv_nrnmpi_init
	50/294 Test #246: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ......................... Passed 5.95 sec
	Start 13: mpi_init::python_nrnmpi_init
	51/294 Test #11: mpi_init::nrniv_mpiopt ............................................................. Passed 0.20 sec
	Start 14: mpi_init::python_mpienv
	52/294 Test #10: connect_dend ....................................................................... Passed 0.27 sec
	Start 15: mpi_init::nrniv_mpiexec_mpiopt
	53/294 Test #9: ringtest ........................................................................... Passed 0.33 sec
	Start 16: mpi_init::nrniv_mpiexec_nrnmpi_init
	54/294 Test #12: mpi_init::nrniv_nrnmpi_init ........................................................ Passed 0.22 sec
	Start 17: mpi_init::python_mpiexec_nrnmpi_init
	55/294 Test #253: testcorenrn_deriv::coreneuron_cpu_online ........................................... Passed 5.88 sec
	Start 18: mpi_init::python_mpiexec_mpienv
	56/294 Test #261: testcorenrn_kin::coreneuron_cpu_online ............................................. Passed 5.91 sec
	Start 19: unit_tests::python_unit_tests
	57/294 Test #250: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ........................... Passed 6.22 sec
	Start 20: pytest::basic_tests_py3.11
	58/294 Test #254: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate .......................... Passed 6.02 sec
	Start 21: pytest_coreneuron::basic_tests_py3.11
	59/294 Test #262: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ............................ Passed 6.04 sec
	Start 22: datahandle::datahandle_tests
	60/294 Test #14: mpi_init::python_mpienv ............................................................ Passed 0.97 sec
	Start 23: coverage_tests::cover_tests
	61/294 Test #13: mpi_init::python_nrnmpi_init ....................................................... Passed 1.04 sec
	Start 24: example_nmodl::ca_ap_hoc
	62/294 Test #24: example_nmodl::ca_ap_hoc ........................................................... Passed 1.27 sec
	Start 25: example_nmodl::cabpump_hoc
	63/294 Test #16: mpi_init::nrniv_mpiexec_nrnmpi_init ................................................ Passed 3.48 sec
	Start 26: example_nmodl::cachan_hoc
	64/294 Test #25: example_nmodl::cabpump_hoc ......................................................... Passed 1.21 sec
	Start 27: example_nmodl::cadif_hoc
	65/294 Test #15: mpi_init::nrniv_mpiexec_mpiopt ..................................................... Passed 3.72 sec
	Start 28: example_nmodl::cadifusl_hoc
	66/294 Test #26: example_nmodl::cachan_hoc .......................................................... Passed 0.49 sec
	Start 29: example_nmodl::cadifusl1_hoc
	67/294 Test #28: example_nmodl::cadifusl_hoc ........................................................ Passed 0.51 sec
	Start 30: example_nmodl::cadifusl2_hoc
	68/294 Test #27: example_nmodl::cadif_hoc ........................................................... Passed 0.79 sec
	Start 31: example_nmodl::cagk_hoc
	69/294 Test #29: example_nmodl::cadifusl1_hoc ....................................................... Passed 0.81 sec
	Start 32: example_nmodl::capmp_hoc
	70/294 Test #30: example_nmodl::cadifusl2_hoc ....................................................... Passed 0.60 sec
	Start 33: example_nmodl::cv_hoc
	71/294 Test #31: example_nmodl::cagk_hoc ............................................................ Passed 0.54 sec
	Start 34: example_nmodl::fh_hoc
	72/294 Test #17: mpi_init::python_mpiexec_nrnmpi_init ............................................... Passed 5.02 sec
	Start 35: example_nmodl::fit1_hoc
	73/294 Test #32: example_nmodl::capmp_hoc ........................................................... Passed 0.48 sec
	Start 36: example_nmodl::gap_hoc
	74/294 Test #33: example_nmodl::cv_hoc .............................................................. Passed 0.49 sec
	Start 37: example_nmodl::hh1_hoc
	75/294 Test #18: mpi_init::python_mpiexec_mpienv .................................................... Passed 5.20 sec
	Start 38: example_nmodl::hhvect_hoc
	76/294 Test #34: example_nmodl::fh_hoc .............................................................. Passed 0.51 sec
	Start 39: example_nmodl::nacum_hoc
	77/294 Test #35: example_nmodl::fit1_hoc ............................................................ Passed 0.62 sec