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August 8, 2023 10:29
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nix log /nix/store/qd0515aymj5jyqb6g6rxif3klasfg7rj-python3.11-qudida-0.0.4.drv
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Sourcing python-remove-tests-dir-hook | |
Sourcing python-catch-conflicts-hook.sh | |
Sourcing python-remove-bin-bytecode-hook.sh | |
Sourcing setuptools-build-hook | |
Using setuptoolsBuildPhase | |
Using setuptoolsShellHook | |
Sourcing pip-install-hook | |
Using pipInstallPhase | |
Sourcing python-imports-check-hook.sh | |
Using pythonImportsCheckPhase | |
Sourcing python-namespaces-hook | |
Sourcing python-catch-conflicts-hook.sh | |
@nix { "action": "setPhase", "phase": "unpackPhase" } | |
unpacking sources | |
unpacking source archive /nix/store/851j4pa06vjvhfvhn513zr89f9icy3y9-qudida-0.0.4.tar.gz | |
source root is qudida-0.0.4 | |
setting SOURCE_DATE_EPOCH to timestamp 1628527674 of file qudida-0.0.4/setup.cfg | |
@nix { "action": "setPhase", "phase": "patchPhase" } | |
patching sources | |
@nix { "action": "setPhase", "phase": "updateAutotoolsGnuConfigScriptsPhase" } | |
updateAutotoolsGnuConfigScriptsPhase | |
@nix { "action": "setPhase", "phase": "configurePhase" } | |
configuring | |
no configure script, doing nothing | |
@nix { "action": "setPhase", "phase": "buildPhase" } | |
building | |
Executing setuptoolsBuildPhase | |
running bdist_wheel | |
running build | |
running build_py | |
creating build | |
creating build/lib | |
creating build/lib/qudida | |
copying qudida/__version__.py -> build/lib/qudida | |
copying qudida/__init__.py -> build/lib/qudida | |
running egg_info | |
writing qudida.egg-info/PKG-INFO | |
writing dependency_links to qudida.egg-info/dependency_links.txt | |
writing requirements to qudida.egg-info/requires.txt | |
writing top-level names to qudida.egg-info/top_level.txt | |
reading manifest file 'qudida.egg-info/SOURCES.txt' | |
writing manifest file 'qudida.egg-info/SOURCES.txt' | |
/nix/store/lm2fgfw9iqs5wy45g2nc4anbfm2zz5zf-python3.11-setuptools-67.4.0/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools. | |
warnings.warn( | |
installing to build/bdist.linux-x86_64/wheel | |
running install | |
running install_lib | |
creating build/bdist.linux-x86_64 | |
creating build/bdist.linux-x86_64/wheel | |
creating build/bdist.linux-x86_64/wheel/qudida | |
copying build/lib/qudida/__version__.py -> build/bdist.linux-x86_64/wheel/qudida | |
copying build/lib/qudida/__init__.py -> build/bdist.linux-x86_64/wheel/qudida | |
running install_egg_info | |
Copying qudida.egg-info to build/bdist.linux-x86_64/wheel/qudida-0.0.4-py3.11.egg-info | |
running install_scripts | |
creating build/bdist.linux-x86_64/wheel/qudida-0.0.4.dist-info/WHEEL | |
creating 'dist/qudida-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it | |
adding 'qudida/__init__.py' | |
adding 'qudida/__version__.py' | |
adding 'qudida-0.0.4.dist-info/METADATA' | |
adding 'qudida-0.0.4.dist-info/WHEEL' | |
adding 'qudida-0.0.4.dist-info/top_level.txt' | |
adding 'qudida-0.0.4.dist-info/RECORD' | |
removing build/bdist.linux-x86_64/wheel | |
/build/qudida-0.0.4/dist /build/qudida-0.0.4 | |
Unpacking to: unpacked/qudida-0.0.4...OK | |
Repacking wheel as ./qudida-0.0.4-py3-none-any.whl...OK | |
/build/qudida-0.0.4 | |
Finished executing setuptoolsBuildPhase | |
@nix { "action": "setPhase", "phase": "installPhase" } | |
installing | |
Executing pipInstallPhase | |
/build/qudida-0.0.4/dist /build/qudida-0.0.4 | |
Processing ./qudida-0.0.4-py3-none-any.whl | |
Requirement already satisfied: numpy>=0.18.0 in /nix/store/1hwymyhafpll583mli5avr6qnlas4747-python3.11-numpy-1.24.2/lib/python3.11/site-packages (from qudida==0.0.4) (1.24.2) | |
Requirement already satisfied: scikit-learn>=0.19.1 in /nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages (from qudida==0.0.4) (1.2.1) | |
Requirement already satisfied: typing-extensions in /nix/store/3x25g7w9iipi5rf0l6r6ml9aih69a3ch-python3.11-typing-extensions-4.5.0/lib/python3.11/site-packages (from qudida==0.0.4) (4.5.0) | |
Requirement already satisfied: scipy>=1.3.2 in /nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages (from scikit-learn>=0.19.1->qudida==0.0.4) (1.10.1) | |
Requirement already satisfied: joblib>=1.1.1 in /nix/store/rq2am5hxxzrjqzz2hck0gkj9mfjvmc1x-python3.11-joblib-1.2.0/lib/python3.11/site-packages (from scikit-learn>=0.19.1->qudida==0.0.4) (1.2.0) | |
Requirement already satisfied: threadpoolctl>=2.0.0 in /nix/store/b646q0y6g99qbs4fc0spb8i5xllrfzvd-python3.11-threadpoolctl-3.1.0/lib/python3.11/site-packages (from scikit-learn>=0.19.1->qudida==0.0.4) (3.1.0) | |
Installing collected packages: qudida | |
Successfully installed qudida-0.0.4 | |
/build/qudida-0.0.4 | |
Finished executing pipInstallPhase | |
@nix { "action": "setPhase", "phase": "pythonOutputDistPhase" } | |
pythonOutputDistPhase | |
Executing pythonOutputDistPhase | |
Finished executing pythonOutputDistPhase | |
@nix { "action": "setPhase", "phase": "fixupPhase" } | |
post-installation fixup | |
shrinking RPATHs of ELF executables and libraries in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4 | |
checking for references to /build/ in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4... | |
patching script interpreter paths in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4 | |
stripping (with command strip and flags -S -p) in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4/lib | |
shrinking RPATHs of ELF executables and libraries in /nix/store/qasz61709yybjjfrxbbzyz49bq3b48cw-python3.11-qudida-0.0.4-dist | |
checking for references to /build/ in /nix/store/qasz61709yybjjfrxbbzyz49bq3b48cw-python3.11-qudida-0.0.4-dist... | |
patching script interpreter paths in /nix/store/qasz61709yybjjfrxbbzyz49bq3b48cw-python3.11-qudida-0.0.4-dist | |
Executing pythonRemoveTestsDir | |
Finished executing pythonRemoveTestsDir | |
@nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" } | |
pythonCatchConflictsPhase | |
@nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" } | |
pythonRemoveBinBytecodePhase | |
@nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" } | |
pythonImportsCheckPhase | |
Executing pythonImportsCheckPhase | |
Check whether the following modules can be imported: qudida | |
Traceback (most recent call last): | |
File "<string>", line 1, in <module> | |
File "<string>", line 1, in <lambda> | |
File "/nix/store/ng1c2jqy48p1x33j1qyg0n5anhfv31g0-python3-3.11.4/lib/python3.11/importlib/__init__.py", line 126, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
File "<frozen importlib._bootstrap>", line 1204, in _gcd_import | |
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load | |
File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked | |
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked | |
File "<frozen importlib._bootstrap_external>", line 940, in exec_module | |
File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed | |
File "/nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4/lib/python3.11/site-packages/qudida/__init__.py", line 6, in <module> | |
from sklearn.decomposition import PCA | |
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/__init__.py", line 82, in <module> | |
from .base import clone | |
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/base.py", line 17, in <module> | |
from .utils import _IS_32BIT | |
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/utils/__init__.py", line 25, in <module> | |
from .fixes import parse_version, threadpool_info | |
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/utils/fixes.py", line 19, in <module> | |
import scipy.stats | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/__init__.py", line 485, in <module> | |
from ._stats_py import * | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/_stats_py.py", line 46, in <module> | |
from . import distributions | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/distributions.py", line 8, in <module> | |
from ._distn_infrastructure import (rv_discrete, rv_continuous, rv_frozen) | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/_distn_infrastructure.py", line 22, in <module> | |
from scipy import optimize | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/__init__.py", line 200, in __getattr__ | |
return _importlib.import_module(f'scipy.{name}') | |
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
File "/nix/store/ng1c2jqy48p1x33j1qyg0n5anhfv31g0-python3-3.11.4/lib/python3.11/importlib/__init__.py", line 126, in import_module | |
return _bootstrap._gcd_import(name[level:], package, level) | |
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/__init__.py", line 417, in <module> | |
from ._linprog import linprog, linprog_verbose_callback | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/_linprog.py", line 21, in <module> | |
from ._linprog_highs import _linprog_highs | |
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/_linprog_highs.py", line 20, in <module> | |
from ._highs._highs_wrapper import _highs_wrapper | |
ImportError: /nix/store/110n021l0cnbs23r69pvcw9g795v7m3x-gcc-11.4.0-lib/lib/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/_highs/_highs_wrapper.cpython-311-x86_64-linux-gnu.so) |
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