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nix log /nix/store/qd0515aymj5jyqb6g6rxif3klasfg7rj-python3.11-qudida-0.0.4.drv
Sourcing python-remove-tests-dir-hook
Sourcing python-catch-conflicts-hook.sh
Sourcing python-remove-bin-bytecode-hook.sh
Sourcing setuptools-build-hook
Using setuptoolsBuildPhase
Using setuptoolsShellHook
Sourcing pip-install-hook
Using pipInstallPhase
Sourcing python-imports-check-hook.sh
Using pythonImportsCheckPhase
Sourcing python-namespaces-hook
Sourcing python-catch-conflicts-hook.sh
@nix { "action": "setPhase", "phase": "unpackPhase" }
unpacking sources
unpacking source archive /nix/store/851j4pa06vjvhfvhn513zr89f9icy3y9-qudida-0.0.4.tar.gz
source root is qudida-0.0.4
setting SOURCE_DATE_EPOCH to timestamp 1628527674 of file qudida-0.0.4/setup.cfg
@nix { "action": "setPhase", "phase": "patchPhase" }
patching sources
@nix { "action": "setPhase", "phase": "updateAutotoolsGnuConfigScriptsPhase" }
updateAutotoolsGnuConfigScriptsPhase
@nix { "action": "setPhase", "phase": "configurePhase" }
configuring
no configure script, doing nothing
@nix { "action": "setPhase", "phase": "buildPhase" }
building
Executing setuptoolsBuildPhase
running bdist_wheel
running build
running build_py
creating build
creating build/lib
creating build/lib/qudida
copying qudida/__version__.py -> build/lib/qudida
copying qudida/__init__.py -> build/lib/qudida
running egg_info
writing qudida.egg-info/PKG-INFO
writing dependency_links to qudida.egg-info/dependency_links.txt
writing requirements to qudida.egg-info/requires.txt
writing top-level names to qudida.egg-info/top_level.txt
reading manifest file 'qudida.egg-info/SOURCES.txt'
writing manifest file 'qudida.egg-info/SOURCES.txt'
/nix/store/lm2fgfw9iqs5wy45g2nc4anbfm2zz5zf-python3.11-setuptools-67.4.0/lib/python3.11/site-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
installing to build/bdist.linux-x86_64/wheel
running install
running install_lib
creating build/bdist.linux-x86_64
creating build/bdist.linux-x86_64/wheel
creating build/bdist.linux-x86_64/wheel/qudida
copying build/lib/qudida/__version__.py -> build/bdist.linux-x86_64/wheel/qudida
copying build/lib/qudida/__init__.py -> build/bdist.linux-x86_64/wheel/qudida
running install_egg_info
Copying qudida.egg-info to build/bdist.linux-x86_64/wheel/qudida-0.0.4-py3.11.egg-info
running install_scripts
creating build/bdist.linux-x86_64/wheel/qudida-0.0.4.dist-info/WHEEL
creating 'dist/qudida-0.0.4-py3-none-any.whl' and adding 'build/bdist.linux-x86_64/wheel' to it
adding 'qudida/__init__.py'
adding 'qudida/__version__.py'
adding 'qudida-0.0.4.dist-info/METADATA'
adding 'qudida-0.0.4.dist-info/WHEEL'
adding 'qudida-0.0.4.dist-info/top_level.txt'
adding 'qudida-0.0.4.dist-info/RECORD'
removing build/bdist.linux-x86_64/wheel
/build/qudida-0.0.4/dist /build/qudida-0.0.4
Unpacking to: unpacked/qudida-0.0.4...OK
Repacking wheel as ./qudida-0.0.4-py3-none-any.whl...OK
/build/qudida-0.0.4
Finished executing setuptoolsBuildPhase
@nix { "action": "setPhase", "phase": "installPhase" }
installing
Executing pipInstallPhase
/build/qudida-0.0.4/dist /build/qudida-0.0.4
Processing ./qudida-0.0.4-py3-none-any.whl
Requirement already satisfied: numpy>=0.18.0 in /nix/store/1hwymyhafpll583mli5avr6qnlas4747-python3.11-numpy-1.24.2/lib/python3.11/site-packages (from qudida==0.0.4) (1.24.2)
Requirement already satisfied: scikit-learn>=0.19.1 in /nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages (from qudida==0.0.4) (1.2.1)
Requirement already satisfied: typing-extensions in /nix/store/3x25g7w9iipi5rf0l6r6ml9aih69a3ch-python3.11-typing-extensions-4.5.0/lib/python3.11/site-packages (from qudida==0.0.4) (4.5.0)
Requirement already satisfied: scipy>=1.3.2 in /nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages (from scikit-learn>=0.19.1->qudida==0.0.4) (1.10.1)
Requirement already satisfied: joblib>=1.1.1 in /nix/store/rq2am5hxxzrjqzz2hck0gkj9mfjvmc1x-python3.11-joblib-1.2.0/lib/python3.11/site-packages (from scikit-learn>=0.19.1->qudida==0.0.4) (1.2.0)
Requirement already satisfied: threadpoolctl>=2.0.0 in /nix/store/b646q0y6g99qbs4fc0spb8i5xllrfzvd-python3.11-threadpoolctl-3.1.0/lib/python3.11/site-packages (from scikit-learn>=0.19.1->qudida==0.0.4) (3.1.0)
Installing collected packages: qudida
Successfully installed qudida-0.0.4
/build/qudida-0.0.4
Finished executing pipInstallPhase
@nix { "action": "setPhase", "phase": "pythonOutputDistPhase" }
pythonOutputDistPhase
Executing pythonOutputDistPhase
Finished executing pythonOutputDistPhase
@nix { "action": "setPhase", "phase": "fixupPhase" }
post-installation fixup
shrinking RPATHs of ELF executables and libraries in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4
checking for references to /build/ in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4...
patching script interpreter paths in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4
stripping (with command strip and flags -S -p) in /nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4/lib
shrinking RPATHs of ELF executables and libraries in /nix/store/qasz61709yybjjfrxbbzyz49bq3b48cw-python3.11-qudida-0.0.4-dist
checking for references to /build/ in /nix/store/qasz61709yybjjfrxbbzyz49bq3b48cw-python3.11-qudida-0.0.4-dist...
patching script interpreter paths in /nix/store/qasz61709yybjjfrxbbzyz49bq3b48cw-python3.11-qudida-0.0.4-dist
Executing pythonRemoveTestsDir
Finished executing pythonRemoveTestsDir
@nix { "action": "setPhase", "phase": "pythonCatchConflictsPhase" }
pythonCatchConflictsPhase
@nix { "action": "setPhase", "phase": "pythonRemoveBinBytecodePhase" }
pythonRemoveBinBytecodePhase
@nix { "action": "setPhase", "phase": "pythonImportsCheckPhase" }
pythonImportsCheckPhase
Executing pythonImportsCheckPhase
Check whether the following modules can be imported: qudida
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "<string>", line 1, in <lambda>
File "/nix/store/ng1c2jqy48p1x33j1qyg0n5anhfv31g0-python3-3.11.4/lib/python3.11/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "<frozen importlib._bootstrap>", line 1204, in _gcd_import
File "<frozen importlib._bootstrap>", line 1176, in _find_and_load
File "<frozen importlib._bootstrap>", line 1147, in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 690, in _load_unlocked
File "<frozen importlib._bootstrap_external>", line 940, in exec_module
File "<frozen importlib._bootstrap>", line 241, in _call_with_frames_removed
File "/nix/store/m1zfw6dn5x6vzqvw5qb7gm2d8yv5z6f1-python3.11-qudida-0.0.4/lib/python3.11/site-packages/qudida/__init__.py", line 6, in <module>
from sklearn.decomposition import PCA
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/__init__.py", line 82, in <module>
from .base import clone
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/base.py", line 17, in <module>
from .utils import _IS_32BIT
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/utils/__init__.py", line 25, in <module>
from .fixes import parse_version, threadpool_info
File "/nix/store/fl5xmpkij4vi9h0gxqd3as97k4f5gviy-python3.11-scikit-learn-1.2.1/lib/python3.11/site-packages/sklearn/utils/fixes.py", line 19, in <module>
import scipy.stats
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/__init__.py", line 485, in <module>
from ._stats_py import *
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/_stats_py.py", line 46, in <module>
from . import distributions
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/distributions.py", line 8, in <module>
from ._distn_infrastructure import (rv_discrete, rv_continuous, rv_frozen)
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/stats/_distn_infrastructure.py", line 22, in <module>
from scipy import optimize
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/__init__.py", line 200, in __getattr__
return _importlib.import_module(f'scipy.{name}')
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/nix/store/ng1c2jqy48p1x33j1qyg0n5anhfv31g0-python3-3.11.4/lib/python3.11/importlib/__init__.py", line 126, in import_module
return _bootstrap._gcd_import(name[level:], package, level)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/__init__.py", line 417, in <module>
from ._linprog import linprog, linprog_verbose_callback
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/_linprog.py", line 21, in <module>
from ._linprog_highs import _linprog_highs
File "/nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/_linprog_highs.py", line 20, in <module>
from ._highs._highs_wrapper import _highs_wrapper
ImportError: /nix/store/110n021l0cnbs23r69pvcw9g795v7m3x-gcc-11.4.0-lib/lib/libstdc++.so.6: version `GLIBCXX_3.4.30' not found (required by /nix/store/64n0wgp2mjwmgg2hm50zg889hpaizp8y-python3.11-scipy-1.10.1/lib/python3.11/site-packages/scipy/optimize/_highs/_highs_wrapper.cpython-311-x86_64-linux-gnu.so)
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