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The following is my Metaflow conda environment error when running locally, on OSX, using a S3 datastore. I do not get any environment issues when running remotely on AWS Batch and get a different set of Conda issues when running locally with a local datastore.
CONDA_CHANNELS=anaconda,conda-forge,maciejkula python3 flows/my_flow.py --environment=conda --datastore=s3 --no-pylint run 130 ?
Metaflow 2.2.5 executing MyFlow for user:ghilston
Validating your flow...
The graph looks good!
cli.py about to create a MetaflowPackage
MetaflowPackage about to init_environment for flow {flow} in environment {environment}
2020-12-11 09:47:33.212 Bootstrapping conda environment...(this could take a few minutes)!
step <bound method MyFlow.start of <__main__.MyFlow object at 0x7fb8c833ff98>> of type <class 'method'>
deco conda<decorated libraries={} python=None disabled=True> of type <class 'metaflow.plugins.conda.conda_step_decorator.CondaStepDecorator'>
step <bound method MyFlow.get_data of <__main__.MyFlow object at 0x7fb8c833ff98>> of type <class 'method'>
deco resources<decorated cpu=4 gpu=0 memory=32768> of type <class 'metaflow.plugins.aws.batch.batch_decorator.ResourcesDecorator'>
deco conda<cli libraries={} python=None disabled=None> of type <class 'metaflow.plugins.conda.conda_step_decorator.CondaStepDecorator'>
Conda ran into an error while setting up environment.:
Step: get_data, Error: UnsatisfiableError: The following specifications were found to be incompatible with each other:
Output in format: Requested package -> Available versions
Package python conflicts for:
requests==2.24.0 -> python
boto3==1.14.47 -> jmespath[version='>=0.7.1,<1.0.0'] -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|3.4.|>=3.8,<3.9.0a0|>=3|>=3.9,<3.10.0a0']
pandas==1.0.0 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
scikit-learn==0.21.2 -> joblib[version='>=0.11'] -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.6|>=3.5,<3.6.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|3.4.']
boto3==1.14.47 -> python
python==3.6.3
click==7.1.2 -> python
coverage==4.5.4 -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
requests==2.24.0 -> certifi[version='>=2017.4.17'] -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0|>=3.5,<3.6.0a0|>=3.9,<3.10.0a0|<4.0']
pandas==1.0.0 -> numpy[version='>=1.14.6,<2.0a0'] -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.9,<3.10.0a0|>=3']
scikit-learn==0.21.2 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0']
Package numpy-base conflicts for:
pandas==1.0.0 -> numpy[version='>=1.14.6,<2.0a0'] -> numpy-base[version='1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.17.2.|1.17.3.|1.17.4.|1.18.1.|1.18.5.|1.19.1|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.16.6|1.16.6|1.17.0|1.17.0',build='py36ha711998_0|py39hd037223_1|py39h7ca7dfd_1|py36hcfb5961_0|py38hcfb5961_0|py38h68fea81_0|py39h3a452eb_0|py36ha711998_4|py35h8a80b8c_4|py36h8a80b8c_4|py27h8a80b8c_4|py38ha711998_4|py36ha711998_5|py36h6575580_5|py27h6575580_5|py37ha711998_5|py37h8a80b8c_0|py27h8a80b8c_0|py37he97cb71_0|py35he97cb71_0|py37h42e5f7b_0|py36h8a80b8c_0|py36h42e5f7b_0|py27h8a80b8c_0|py36ha711998_0|py35ha711998_0|py36h8a80b8c_0|py36ha711998_0|py35ha711998_0|py37ha711998_1|py27h8a80b8c_1|py36h8a80b8c_1|py37ha711998_0|py36ha711998_0|py36h8a80b8c_0|py27h8a80b8c_0|py36h8a80b8c_0|py36ha711998_0|py37h6575580_0|py37h6575580_0|py37ha711998_0|py36ha711998_0|py37h6575580_1|py27h6575580_1|py36h6575580_1|py36ha711998_0|py27h6575580_0|py37h6575580_0|py37h6575580_1|py37ha711998_1|py36h6575580_1|py36ha711998_0|py37h6575580_0|py36ha711998_0|py37h6575580_0|py37ha711998_0|py36h6575580_0|py37h6575580_0|py37ha711998_0|py36ha711998_0|py37h6575580_0|py37ha711998_0|py36ha711998_0|py36h6575580_0|py37h6575580_0|py27ha711998_0|py37hcfb5961_0|py37h68fea81_0|py38hcfb5961_0|py36hcfb5961_0|py38h68fea81_0|py36h68fea81_0|py27h6575580_0|py38ha711998_0|py38h6575580_0|py27h6575580_0|py36h6575580_0|py27ha711998_0|py36h6575580_0|py27h6575580_0|py27ha711998_0|py37ha711998_0|py36ha711998_0|py27h6575580_0|py27ha711998_0|py27h6575580_0|py37ha711998_0|py36h6575580_0|py27ha711998_0|py27ha711998_1|py27h6575580_1|py36ha711998_1|py37ha711998_0|py36h6575580_0|py27ha711998_0|py37ha711998_1|py36ha711998_1|py27ha711998_1|py36h6575580_0|py27h6575580_0|py27ha711998_0|py36h6575580_0|py27h6575580_0|py37ha711998_0|py27ha711998_0|py37h8a80b8c_0|py27h8a80b8c_0|py27ha711998_0|py37h8a80b8c_0|py37h8a80b8c_1|py36ha711998_1|py27ha711998_1|py27h8a80b8c_0|py37ha711998_0|py35h8a80b8c_0|py37h8a80b8c_0|py27ha711998_0|py37ha711998_0|py27ha711998_0|py35h8a80b8c_0|py37h8a80b8c_0|py27h42e5f7b_0|py35h42e5f7b_0|py35h8a80b8c_0|py36he97cb71_0|py36h8a80b8c_0|py27he97cb71_0|py37h6575580_5|py27ha711998_5|py38h6575580_4|py37h8a80b8c_4|py27ha711998_4|py37ha711998_4|py35ha711998_4|py39hde55871_0|py37h68fea81_0|py36h68fea81_0|py37hcfb5961_0|py36h6575580_0']
spotlight==0.1.5 -> numpy[version='>=1.9'] -> numpy-base[version='1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.11.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.3|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.4|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.5|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.14.6|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.0|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.1|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.2|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.3|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.15.4|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.0|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.1|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.2|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.3|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.4|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.5|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.16.6|1.17.2.|1.17.3.|1.17.4.|1.18.1.|1.18.5.|1.19.1|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|1.9.3|>=1.9.3,<2.0a0|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.19.2|1.16.6|1.16.6|1.17.0|1.17.0',build='py36ha711998_0|py36h6575580_0|py39h7ca7dfd_1|py36hcfb5961_0|py38hcfb5961_0|py27h9797aa9_6|py27ha9ae307_6|py37h9797aa9_6|py36h9797aa9_6|py36ha9ae307_6|py37h9797aa9_7|py35h9797aa9_7|py35ha9ae307_7|py27h9797aa9_7|py27h9797aa9_7|py37h9797aa9_7|py36h9797aa9_7|py37ha9ae307_7|py27h9797aa9_8|py36h9797aa9_8|py35h9797aa9_8|py35ha9ae307_8|py37h8a80b8c_9|py27h8a80b8c_9|py36h8a80b8c_9|py27he97cb71_9|py35he97cb71_9|py37h42e5f7b_10|py36h8a80b8c_10|py36h42e5f7b_10|py27ha711998_10|py37ha711998_10|py27h6575580_11|py27h6575580_12|py36ha711998_12|py27ha711998_12|py38h6575580_12|py38h6575580_15|py36h7ef55bc_1|py35h479e554_1|py27h479e554_1|py27h9797aa9_0|py35h9797aa9_0|py35h9797aa9_0|py27h9797aa9_1|py37ha9ae307_1|py37h9797aa9_2|py36h9797aa9_2|py36ha9ae307_3|py36h9797aa9_3|py37h9797aa9_3|py37ha9ae307_3|py27ha9ae307_4|py36h9797aa9_4|py37h9797aa9_4|py35ha9ae307_4|py36ha711998_4|py35h8a80b8c_4|py36h8a80b8c_4|py27h8a80b8c_4|py38ha711998_4|py36ha711998_5|py36h6575580_5|py27h6575580_5|py37ha711998_5|py37h8a80b8c_0|py27h8a80b8c_0|py37he97cb71_0|py35he97cb71_0|py37h42e5f7b_0|py36h8a80b8c_0|py36h42e5f7b_0|py27h8a80b8c_0|py36ha711998_0|py35ha711998_0|py36h8a80b8c_0|py36ha711998_0|py35ha711998_0|py37ha711998_1|py27h8a80b8c_1|py36h8a80b8c_1|py37ha711998_0|py36ha711998_0|py36h8a80b8c_0|py27h8a80b8c_0|py36h8a80b8c_0|py36ha711998_0|py37h6575580_0|py37h6575580_0|py37ha711998_0|py36ha711998_0|py37h6575580_1|py27h6575580_1|py36h6575580_1|py36ha711998_0|py27h6575580_0|py37h6575580_0|py37h6575580_1|py37ha711998_1|py36h6575580_1|py36ha711998_0|py37h6575580_0|py36ha711998_0|py37h6575580_0|py37ha711998_0|py36h6575580_0|py37h6575580_0|py37ha711998_0|py36ha711998_0|py37h6575580_0|py37ha711998_0|py36ha711998_0|py36h6575580_0|py37h6575580_0|py27ha711998_0|py37hcfb5961_0|py37h68fea81_0|py38hcfb5961_0|py36hcfb5961_0|py38h68fea81_0|py36h68fea81_0|py27h6575580_0|py38ha711998_0|py38h6575580_0|py27h6575580_0|py36h6575580_0|py27ha711998_0|py36h6575580_0|py27h6575580_0|py27ha711998_0|py37ha711998_0|py36ha711998_0|py27h6575580_0|py27ha711998_0|py27h6575580_0|py37ha711998_0|py36h6575580_0|py27ha711998_0|py27ha711998_1|py27h6575580_1|py36ha711998_1|py37ha711998_0|py36h6575580_0|py27ha711998_0|py37ha711998_1|py36ha711998_1|py27ha711998_1|py36h6575580_0|py27h6575580_0|py27ha711998_0|py36h6575580_0|py27h6575580_0|py37ha711998_0|py27ha711998_0|py37h8a80b8c_0|py27h8a80b8c_0|py27ha711998_0|py37h8a80b8c_0|py37h8a80b8c_1|py36ha711998_1|py27ha711998_1|py27h8a80b8c_0|py37ha711998_0|py35h8a80b8c_0|py37h8a80b8c_0|py27ha711998_0|py37ha711998_0|py27ha711998_0|py35h8a80b8c_0|py37h8a80b8c_0|py27h42e5f7b_0|py35h42e5f7b_0|py35h8a80b8c_0|py36he97cb71_0|py36h8a80b8c_0|py27he97cb71_0|py37h6575580_5|py27ha711998_5|py38h6575580_4|py37h8a80b8c_4|py27ha711998_4|py37ha711998_4|py35ha711998_4|py35h9797aa9_4|py37ha9ae307_4|py36ha9ae307_4|py27h9797aa9_4|py27ha9ae307_3|py27h9797aa9_3|py27ha9ae307_2|py37ha9ae307_2|py27h9797aa9_2|py36ha9ae307_2|py36ha9ae307_1|py27ha9ae307_1|py37h9797aa9_1|py36h9797aa9_1|py35ha9ae307_0|py27ha9ae307_0|py27h9797aa9_0|py36h9797aa9_0|py36ha9ae307_0|py35ha9ae307_0|py36h9797aa9_0|py36ha9ae307_0|py27ha9ae307_0|py35h7ef55bc_1|py27h7ef55bc_1|py36h479e554_1|py38ha711998_15|py38h6575580_14|py38ha711998_14|py38h6575580_13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scikit-learn==0.21.2 -> numpy[version='>=1.11.3,<2.0a0'] -> 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Package setuptools conflicts for:
scikit-learn==0.21.2 -> joblib[version='>=0.11'] -> setuptools
python==3.6.3 -> pip -> setuptools
Package pypy3.6 conflicts for:
spotlight==0.1.5 -> numpy[version='>=1.9'] -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.|>=7.3.1|>=7.3.2']
pandas==1.0.0 -> numpy[version='>=1.14.6,<2.0a0'] -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.|>=7.3.1|>=7.3.2']
requests==2.24.0 -> certifi[version='>=2017.4.17'] -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.|>=7.3.1|>=7.3.2']
scikit-learn==0.21.2 -> numpy[version='>=1.11.3,<2.0a0'] -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.|>=7.3.1|>=7.3.2']
coverage==4.5.4 -> python[version='>=3.6,<3.7.0a0'] -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.']
boto3==1.14.47 -> python -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.|>=7.3.2']
click==7.1.2 -> python -> pypy3.6[version='7.3.0.|7.3.1.|7.3.2.']
Package ca-certificates conflicts for:
click==7.1.2 -> python -> ca-certificates
coverage==4.5.4 -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
requests==2.24.0 -> python -> ca-certificates
python==3.6.3 -> openssl[version='>=1.0.2m,<1.0.3a'] -> ca-certificates
boto3==1.14.47 -> python -> ca-certificates
spotlight==0.1.5 -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
Package urllib3 conflicts for:
boto3==1.14.47 -> botocore[version='>=1.17.47,<1.18.0'] -> urllib3[version='>=1.20,<1.26']
spotlight==0.1.5 -> requests -> urllib3[version='>=1.21.1,<1.22|>=1.21.1,<1.23|>=1.21.1,<1.24|>=1.21.1,<1.25|>=1.21.1,<1.26,!=1.25.0,!=1.25.1']
requests==2.24.0 -> urllib3[version='>=1.21.1,<1.26,!=1.25.0,!=1.25.1']
Package libcxxabi conflicts for:
scikit-learn==0.21.2 -> libcxx[version='>=4.0.1'] -> libcxxabi[version='4.0.1|8.0.1|8.0.0|8.0.0|8.0.0|8.0.0',build='1|2|0|hcfea43d_1|hebd6815_0|4|3']
pandas==1.0.0 -> libcxx[version='>=4.0.1'] -> libcxxabi[version='4.0.1|8.0.1|8.0.0|8.0.0|8.0.0|8.0.0',build='1|2|0|hcfea43d_1|hebd6815_0|4|3']
python==3.6.3 -> libcxx[version='>=4.0.1'] -> libcxxabi[version='4.0.1|8.0.1|8.0.0|8.0.0|8.0.0|8.0.0',build='1|2|0|hcfea43d_1|hebd6815_0|4|3']
Package tzdata conflicts for:
requests==2.24.0 -> python -> tzdata
click==7.1.2 -> python -> tzdata
boto3==1.14.47 -> python -> tzdata
Package python-dateutil conflicts for:
boto3==1.14.47 -> botocore[version='>=1.17.47,<1.18.0'] -> python-dateutil[version='>=2.1,<3.0.0']
pandas==1.0.0 -> python-dateutil[version='>=2.6.1']
Package numpy conflicts for:
spotlight==0.1.5 -> h5py -> numpy[version='1.10.|1.11.|1.12.|1.13.|>=1.11.3,<2.0a0|>=1.14.6,<2.0a0|>=1.16.5,<2.0a0|>=1.19.4,<2.0a0|>=1.19.2,<2.0a0|>=1.9.3,<2.0a0|>=1.8|>=1.8,<1.14|>=1.18.5,<2.0a0|>=1.16.6,<2.0a0|>=1.15.1,<2.0a0|>=1.18.1,<2.0a0|>=1.11']
spotlight==0.1.5 -> numpy[version='>=1.9']
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