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bartoldeman/easybuild_test_report_easyconfigs_pr6712_20180421-UTC-16-04-43.md

Created September 21, 2018 16:04
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EasyBuild test report for easyconfigs PR #6712
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easybuild_test_report_easyconfigs_pr6712_20180421-UTC-16-04-43.md

Test report for easybuilders/easybuild-easyconfigs#6712

Test result

Build succeeded for 5 out of 5 (5 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS Java-1.8.eb
  • SUCCESS R-3.5.1-foss-2018b.eb
  • SUCCESS Bazel-0.16.0-GCCcore-7.3.0.eb
  • SUCCESS GATK-4.0.8.1-foss-2018b-Python-2.7.15.eb
  • SUCCESS GATK-4.0.8.1-foss-2018b-Python-3.6.6.eb

Time info

  • start: Fri, 21 Sep 2018 13:51:33 +0000 (UTC)
  • end: Fri, 21 Sep 2018 16:04:43 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 3.7.0.dev0-reddba20d6fbbfc016353efe1efa37fe7d850dc59
  • easybuild-easyblocks version: 3.7.0.dev0-raa07fe5ad6ccca28c586f3e8941947f9f99d696b
  • command line:
eb --from-pr 6712 --upload-test-report --github-user=bartoldeman --rebuild -r
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/localscratch/easybuild/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/localscratch/easybuild/containers'
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-debug
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fixed-installdir-naming-scheme
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-module-depends-on
--disable-module-only
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-full-config
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--from-pr='6712'
--github-user='bartoldeman'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--installpath='/localscratch/easybuild'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/localscratch/easybuild/sources/r'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,phys,system,toolchain,tools,vis'
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/localscratch/easybuild/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pr-target-repo='easybuild-easyconfigs'
--prefix='/localscratch/easybuild'
--rebuild
--repository='FileRepository'
--repositorypath='/localscratch/easybuild/ebfiles_repo'
--robot-paths=''
--robot='/localscratch/easybuild/software/EasyBuild/3.6.2/lib/python2.6/site-packages/easybuild_easyconfigs-3.6.2-py2.6.egg/easybuild/easyconfigs'
--sourcepath='/localscratch/easybuild/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'

System info

  • core count: 16
  • cpu model: Intel(R) Xeon(R) CPU E5-2650 v2 @ 2.60GHz
  • cpu speed: 2600.096
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) ;
  • glibc version: 2.12
  • hostname: aw-4r13-n22
  • os name: centos
  • os type: Linux
  • os version: 6.6
  • platform name: x86_64-unknown-linux
  • python version: 2.6.6 (r266:84292, Jan 22 2014, 09:42:36) ; [GCC 4.4.7 20120313 (Red Hat 4.4.7-4)]
  • system gcc path: /usr/bin/gcc
  • system python path: /usr/bin/python
  • total memory: 64396

List of loaded modules

  • EasyBuild/3.6.2

Environment

BASH_ENV = /software/CentOS-6/tools/lmod/lmod/init/bash
BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@");
 [ $? = 0 ] && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CVS_RSH = ssh
EASYBUILD_PREFIX = /localscratch/easybuild
EBDEVELEASYBUILD = /localscratch/easybuild/software/EasyBuild/3.6.2/easybuild/EasyBuild-3.6.2-easybuild-devel
EBROOTEASYBUILD = /localscratch/easybuild/software/EasyBuild/3.6.2
EBVERSIONEASYBUILD = 3.6.2
FANCYLOGGER_IGNORE_MPI4PY = 1
G_BROKEN_FILENAMES = 1
HISTSIZE = 500000
HISTTIMEFORMAT = %F %T 
HOME = /home/boldeman
HOSTNAME = aw-4r13-n22
LANG = en_CA.UTF-8
LC_TIME = en_GB.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /software/CentOS-6/tools/lmod/lmod/libexec/lmod
LMOD_COLORIZE = yes
LMOD_DIR = /software/CentOS-6/tools/lmod/lmod/libexec
LMOD_FULL_SETTARG_SUPPORT = no
LMOD_PKG = /software/CentOS-6/tools/lmod/lmod
LMOD_PREPEND_BLOCK = normal
LMOD_SETTARG_CMD = :
LMOD_VERSION = 6.1
LMOD_arch = x86_64
LMOD_sys = Linux
LOADEDMODULES = EasyBuild/3.6.2
LOGNAME = boldeman
LSCRATCH = /localscratch
LS_COLORS = rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:
MAIL = /var/spool/mail/boldeman
MANPATH = /software/CentOS-6/tools/lmod/lmod/share/man::
MODULEPATH = /localscratch/easybuild/modules/all
MODULEPATH_ROOT = /sb/software/CentOS-6/eb/modules/all
MODULESHOME = /software/CentOS-6/tools/lmod/lmod
PATH = /localscratch/easybuild/software/EasyBuild/3.6.2/bin:/software/CentOS-6/tools/lua-5.1.4.8/bin:/localscratch/lmod/lmod/lmod/libexec:/opt/torque/x86_64/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/usr/lpp/mmfs/bin:/home/boldeman/bin
PROMPT_COMMAND = history -a ; history -a ; 
PWD = /localscratch/easybuild/sources/r
PYTHONOPTIMIZE = 1
PYTHONPATH = /localscratch/easybuild/software/EasyBuild/3.6.2/lib/python2.6/site-packages
QTDIR = /usr/lib64/qt-3.3
QTINC = /usr/lib64/qt-3.3/include
QTLIB = /usr/lib64/qt-3.3/lib
RAMDISK = /dev/shm
SCRATCH = /gs/scratch/boldeman
SHELL = /bin/bash
SHLVL = 3
SSH_ASKPASS = /usr/libexec/openssh/gnome-ssh-askpass
SSH_AUTH_SOCK = /tmp/ssh-UKRzX25327/agent.25327
SSH_CLIENT = 10.241.129.12 35172 22
SSH_CONNECTION = 10.241.129.12 35172 10.242.81.22 22
SSH_TTY = /dev/pts/2
STY = 25404.pts-2.aw-4r13-n22
TERM = screen
TERMCAP = SC|screen|VT 100/ANSI X3.64 virtual terminal:\
	:DO=\E[%dB:LE=\E[%dD:RI=\E[%dC:UP=\E[%dA:bs:bt=\E[Z:\
	:cd=\E[J:ce=\E[K:cl=\E[H\E[J:cm=\E[%i%d;%dH:ct=\E[3g:\
	:do=^J:nd=\E[C:pt:rc=\E8:rs=\Ec:sc=\E7:st=\EH:up=\EM:\
	:le=^H:bl=^G:cr=^M:it#8:ho=\E[H:nw=\EE:ta=^I:is=\E)0:\
	:li#41:co#90:am:xn:xv:LP:sr=\EM:al=\E[L:AL=\E[%dL:\
	:cs=\E[%i%d;%dr:dl=\E[M:DL=\E[%dM:dc=\E[P:DC=\E[%dP:\
	:im=\E[4h:ei=\E[4l:mi:IC=\E[%d@:ks=\E[?1h\E=:\
	:ke=\E[?1l\E>:vi=\E[?25l:ve=\E[34h\E[?25h:vs=\E[34l:\
	:ti=\E[?1049h:te=\E[?1049l:us=\E[4m:ue=\E[24m:so=\E[3m:\
	:se=\E[23m:mb=\E[5m:md=\E[1m:mr=\E[7m:me=\E[m:ms:\
	:Co#8:pa#64:AF=\E[3%dm:AB=\E[4%dm:op=\E[39;49m:AX:\
	:vb=\Eg:G0:as=\E(0:ae=\E(B:\
	:ac=\140\140aaffggjjkkllmmnnooppqqrrssttuuvvwwxxyyzz{{||}}~~..--++,,hhII00:\
	:po=\E[5i:pf=\E[4i:k0=\E[10~:k1=\EOP:k2=\EOQ:k3=\EOR:\
	:k4=\EOS:k5=\E[15~:k6=\E[17~:k7=\E[18~:k8=\E[19~:\
	:k9=\E[20~:k;=\E[21~:F1=\E[23~:F2=\E[24~:F3=\E[1;2P:\
	:F4=\E[1;2Q:F5=\E[1;2R:F6=\E[1;2S:F7=\E[15;2~:\
	:F8=\E[17;2~:F9=\E[18;2~:FA=\E[19;2~:kb=�:K2=\EOE:\
	:kB=\E[Z:kF=\E[1;2B:kR=\E[1;2A:*4=\E[3;2~:*7=\E[1;2F:\
	:#2=\E[1;2H:#3=\E[2;2~:#4=\E[1;2D:%c=\E[6;2~:%e=\E[5;2~:\
	:%i=\E[1;2C:kh=\E[1~:@1=\E[1~:kH=\E[4~:@7=\E[4~:\
	:kN=\E[6~:kP=\E[5~:kI=\E[2~:kD=\E[3~:ku=\EOA:kd=\EOB:\
	:kr=\EOC:kl=\EOD:km:
TMP = /localscratch
USER = boldeman
WINDOW = 0
_ = /usr/bin/python2
_LMFILES_ = /localscratch/easybuild/modules/all/EasyBuild/3.6.2.lua
_ModuleTable001_ = 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
_ModuleTable002_ = c3lidWlsZC9tb2R1bGVzL2FsbCIsfQ==
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_LOADEDMODULES = EasyBuild/3.6.2:1
__LMOD_REF_COUNT_MODULEPATH = /localscratch/easybuild/modules/all:1
__LMOD_REF_COUNT_PATH = /localscratch/easybuild/software/EasyBuild/3.6.2/bin:1;/software/CentOS-6/tools/lua-5.1.4.8/bin:1;/localscratch/lmod/lmod/lmod/libexec:1;/opt/torque/x86_64/bin:2;/usr/lib64/qt-3.3/bin:1;/usr/local/bin:1;/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/sbin:1;/usr/lpp/mmfs/bin:2;/home/boldeman/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /localscratch/easybuild/software/EasyBuild/3.6.2/lib/python2.6/site-packages:1
__LMOD_REF_COUNT__LMFILES_ = /localscratch/easybuild/modules/all/EasyBuild/3.6.2.lua:1
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