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Created December 1, 2020 04:12
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR #11792
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easybuild_test_report_11792_easybuilders_preasybuild-easyconfigs_20201201-UTC-04-12-30.md

Test report for easybuilders/easybuild-easyconfigs#11792

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS SciPy-bundle-2020.11-intel-2020b.eb

Time info

  • start: Tue, 01 Dec 2020 03:41:19 +0000 (UTC)
  • end: Tue, 01 Dec 2020 04:12:30 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.3.2.dev0-rca1d9c346d4ce638c0926ab85a18769e9e7baf0e
  • easybuild-easyblocks version: 4.3.2.dev0-r7c29f35731db2294d9c85615808d903aa0116c53
  • command line:
eb --from-pr 11792 -dr --rebuild -u
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/dev/shm/build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/opt/apps/centos7/naples/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--from-pr='11792'
--generate-devel-module
--git-working-dirs-path='/home/easybuild/git-working-dirs'
--github-user='migueldiascosta'
--hide-deps='ANTLR,APR,APR-util,AT-SPI2-ATK,AT-SPI2-core,ATK,Autoconf,Automake,Autotools,Bazel,Bison,Blosc,CFITSIO,CMake,CapnProto,CUSP,Coreutils,DB,DBus,DocBook-XML,Doxygen,Dyninst,Eigen,ETSF_IO,Exiv2,FFmpeg,FLTK,FTGL,FreeXL,FriBidi,GCC,GCCcore,GDAL,GEGL,GL2PS,GLEW,GLib,GLPK,GMP,GPC,GObject-Introspection,GTI,GTK+,GTS,Gdk-Pixbuf,Ghostscript,Guile,GraphicsMagick,GtkSourceView,HarfBuzz,JUnit,JSON-C,JSON-GLib,JasPer,LAME,LLVM,LMBD,LibTIFF,Lua,LibUUID,Libint,LittleCMS,M4,METIS,MPFR,Mesa,NASM,NLopt,NSPR,NSS,Nim,OPARI2,OpenJPEG,OpenPGM,OpenSSL,OTF2,PCRE,PDT,PROJ,Pango,PnMPI,PyCairo,PyGObject,Qhull,Qt,Qt5,S-Lang,SCons,SIP,SQLite,SWIG,Serf,Szip,Tcl,Tk,UCX,UDUNITS,X11,XML-LibXML,XML-Parser,XZ,XKeyboardConfig,YAXT,Yasm,adwaita-icon-theme,ant,assimp,babl,binutils,byacc,bzip2,cairo,cURL,dbus-glib,damageproto,eudev,expat,file,g2clib,g2lib,gc,gexiv2,glproto,gperf,gperfguile,grib_api,gsettings-desktop-schemas,fixesproto,flex,fontsproto,fontconfig,freeglut,freetype,gcccuda,gettext,help2man,hwloc,icc,ifort,iccifort,iccifortcuda,inputproto,intltool,itstool,jemalloc,jhbuild,kbproto,libGLU,libICE,libSM,libX11,libXau,libXaw,libXcursor,libXdamage,libXdmcp,libXext,libXfixes,libXfont,libXft,libXi,libXinerama,libXmu,libXpm,libXrandr,libXrender,libXt,libXtst,libcerf,libcroco,libctl,libdap,libdrm,libdwarf,libelf,libepoxy,libevent,libffi,libfontenc,libgd,libgeotiff,libglade,libidn,libjpeg-turbo,libmatheval,libmypaint,libpng,libpciaccess,libpthread-stubs,libreadline,librsvg,libsodium,libtool,libunistring,libunwind,libyaml,libxcb,libxkbcommon,libxml2,libxslt,makedepend,motif,ncurses,nettle,numactl,nvidia,pixman,pkg-config,pkgconfig,popt,pscom,protobuf,qrupdate,randrproto,recordproto,renderproto,scrollkeeper,tbb,tcsh,texinfo,util-linux,wxPropertyGrid,wxWidgets,x264,x265,xbitmaps,xcb-proto,xcb-util,xcb-util-image,xcb-util-keysyms,xcb-util-renderutil,xcb-util-wm,xextproto,xineramaproto,xorg-macros,xprop,xproto,xtrans,zlib'
--hide-toolchains='GCCcore,GCC,gcccuda,gompi,gompic,iimpi,iimpic,iccifort,iccifortcuda'
--hooks='/opt/apps/easyhooks/hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/opt/apps/centos7/naples'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/home/easybuild'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='HierarchicalMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--optarch='{\'GCC\': \'march=znver1 -mavx2 -mfma -g\', \'Intel\': \'march=core-avx2 -fma -g -traceback\'}'
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/opt/apps/centos7/naples/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/opt/apps/centos7/naples'
--rebuild
--repository='FileRepository'
--repositorypath='/opt/apps/centos7/naples/ebfiles_repo'
--robot-paths=''
--robot='/opt/apps/develop/easybuild-easyconfigs/easybuild/easyconfigs'
--sourcepath='/opt/apps/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--subdir-user-modules='.local/easybuild/modules'
--suffix-modules-path='all'
--test-report-env-filter='^SSH|USER|HOSTNAME|UID|.*COOKIE.*'
--tmpdir='/dev/shm/tmp'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 64
  • cpu arch: x86_64
  • cpu arch name: zen
  • cpu model: AMD EPYC 7601 32-Core Processor
  • cpu speed: 2200.0
  • cpu vendor: AMD
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC) ;
  • glibc version: 2.17
  • hostname: sms
  • os name: centos linux
  • os type: Linux
  • os version: 7.6.1810
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Aug 7 2019, 00:51:29) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-39)]
  • system gcc path: /bin/gcc
  • system python path: /bin/python
  • total memory: 515687

List of loaded modules

  • EasyBuild-develop

Environment

BASH_ENV = /opt/ohpc/admin/lmod/lmod/init/bash
BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
EASYBUILD_BUILDPATH = /dev/shm/build
EASYBUILD_FIXED_INSTALLDIR_NAMING_SCHEME = False
EASYBUILD_GIT_WORKING_DIRS_PATH = /home/easybuild/git-working-dirs
EASYBUILD_HIDE_DEPS = ANTLR,APR,APR-util,AT-SPI2-ATK,AT-SPI2-core,ATK,Autoconf,Automake,Autotools,Bazel,Bison,Blosc,CFITSIO,CMake,CapnProto,CUSP,Coreutils,DB,DBus,DocBook-XML,Doxygen,Dyninst,Eigen,ETSF_IO,Exiv2,FFmpeg,FLTK,FTGL,FreeXL,FriBidi,GCC,GCCcore,GDAL,GEGL,GL2PS,GLEW,GLib,GLPK,GMP,GPC,GObject-Introspection,GTI,GTK+,GTS,Gdk-Pixbuf,Ghostscript,Guile,GraphicsMagick,GtkSourceView,HarfBuzz,JUnit,JSON-C,JSON-GLib,JasPer,LAME,LLVM,LMBD,LibTIFF,Lua,LibUUID,Libint,LittleCMS,M4,METIS,MPFR,Mesa,NASM,NLopt,NSPR,NSS,Nim,OPARI2,OpenJPEG,OpenPGM,OpenSSL,OTF2,PCRE,PDT,PROJ,Pango,PnMPI,PyCairo,PyGObject,Qhull,Qt,Qt5,S-Lang,SCons,SIP,SQLite,SWIG,Serf,Szip,Tcl,Tk,UCX,UDUNITS,X11,XML-LibXML,XML-Parser,XZ,XKeyboardConfig,YAXT,Yasm,adwaita-icon-theme,ant,assimp,babl,binutils,byacc,bzip2,cairo,cURL,dbus-glib,damageproto,eudev,expat,file,g2clib,g2lib,gc,gexiv2,glproto,gperf,gperfguile,grib_api,gsettings-desktop-schemas,fixesproto,flex,fontsproto,fontconfig,freeglut,freetype,gcccuda,gettext,help2man,hwloc,icc,ifort,iccifort,iccifortcuda,inputproto,intltool,itstool,jemalloc,jhbuild,kbproto,libGLU,libICE,libSM,libX11,libXau,libXaw,libXcursor,libXdamage,libXdmcp,libXext,libXfixes,libXfont,libXft,libXi,libXinerama,libXmu,libXpm,libXrandr,libXrender,libXt,libXtst,libcerf,libcroco,libctl,libdap,libdrm,libdwarf,libelf,libepoxy,libevent,libffi,libfontenc,libgd,libgeotiff,libglade,libidn,libjpeg-turbo,libmatheval,libmypaint,libpng,libpciaccess,libpthread-stubs,libreadline,librsvg,libsodium,libtool,libunistring,libunwind,libyaml,libxcb,libxkbcommon,libxml2,libxslt,makedepend,motif,ncurses,nettle,numactl,nvidia,pixman,pkg-config,pkgconfig,popt,pscom,protobuf,qrupdate,randrproto,recordproto,renderproto,scrollkeeper,tbb,tcsh,texinfo,util-linux,wxPropertyGrid,wxWidgets,x264,x265,xbitmaps,xcb-proto,xcb-util,xcb-util-image,xcb-util-keysyms,xcb-util-renderutil,xcb-util-wm,xextproto,xineramaproto,xorg-macros,xprop,xproto,xtrans,zlib
EASYBUILD_HIDE_TOOLCHAINS = GCCcore,GCC,gcccuda,gompi,gompic,iimpi,iimpic,iccifort,iccifortcuda
EASYBUILD_HOOKS = /opt/apps/easyhooks/hooks.py
EASYBUILD_MODULES_TOOL = Lmod
EASYBUILD_MODULE_NAMING_SCHEME = HierarchicalMNS
EASYBUILD_OPTARCH = Intel:march=core-avx2 -fma -g -traceback;GCC:march=znver1 -mavx2 -mfma -g
EASYBUILD_PREFIX = /opt/apps/centos7/naples
EASYBUILD_SOURCEPATH = /opt/apps/sources
EASYBUILD_TEST_REPORT_ENV_FILTER = ^SSH|USER|HOSTNAME|UID|.*COOKIE.*
EASYBUILD_TMPDIR = /dev/shm/tmp
EB_SCRIPT_PATH = /opt/apps/develop/easybuild-framework/eb
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HISTTIMEFORMAT = %s 
HOME = /home/easybuild
INTEL_LICENSE_FILE = /opt/intel/licenses/COM_L___LCX2-LNBWL4T7.lic
I_MPI_PIN = 1
KMP_AFFINITY = granularity=fine,compact
LANG = en_SG.UTF-8
LD_PRELOAD = /opt/apps/centos7/naples/libfakeintel.so
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_CMD = /opt/ohpc/admin/lmod/lmod/libexec/lmod
LMOD_COLORIZE = no
LMOD_DIR = /opt/ohpc/admin/lmod/lmod/libexec
LMOD_FULL_SETTARG_SUPPORT = no
LMOD_PKG = /opt/ohpc/admin/lmod/lmod
LMOD_PREPEND_BLOCK = normal
LMOD_SETTARG_CMD = :
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_VERSION = 7.8.15
LOADEDMODULES = EasyBuild-develop
LOGNAME = easybuild
LS_COLORS = rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arc=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lha=38;5;9:*.lz4=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.tzo=38;5;9:*.t7z=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lrz=38;5;9:*.lz=38;5;9:*.lzo=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.bz=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.war=38;5;9:*.ear=38;5;9:*.sar=38;5;9:*.rar=38;5;9:*.alz=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.cab=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.webm=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:
MAIL = /var/spool/mail/easybuild
MANPATH = :/opt/pbs/share/man
MKL_CBWR = AVX2
MKL_DEBUG_CPU_TYPE = 5
MODULEPATH = /opt/apps/develop/modules:/opt/apps/centos7/naples/modules/all/Core
MODULEPATH_ROOT = /opt/apps/centos7/naples/modules/all
MODULESHOME = /opt/ohpc/admin/lmod/lmod
PATH = /opt/apps/develop/easybuild-framework:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/pbs/bin:/home/easybuild/.local/bin:/home/easybuild/bin
PWD = /home/easybuild
PYTHONOPTIMIZE = 1
PYTHONPATH = /opt/apps/develop/easybuild-easyconfigs:/opt/apps/develop/easybuild-easyblocks:/opt/apps/develop/easybuild-framework
SHELL = /bin/bash
SHLVL = 2
TERM = xterm-256color
VASP6_VDWKERNEL_PATH = /home/easybuild/vdw_kernel.bindat_cAJxgvm
XDG_SESSION_ID = 14297
_ = /bin/python
_LMFILES_ = /opt/apps/develop/modules/EasyBuild-develop
_ModuleTable001_ = 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
_ModuleTable002_ = b3JlIix9LFsic3lzdGVtQmFzZU1QQVRIIl09Ii9vcHQvb2hwYy9wdWIvbW9kdWxlZmlsZXMiLH0=
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_LOADEDMODULES = EasyBuild-develop:1
__LMOD_REF_COUNT_MODULEPATH = /opt/apps/develop/modules:1;/opt/apps/centos7/naples/modules/all/Core:1
__LMOD_REF_COUNT_PATH = /opt/apps/develop/easybuild-framework:1;/usr/local/bin:1;/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/pbs/bin:1
__LMOD_REF_COUNT_PYTHONPATH = /opt/apps/develop/easybuild-easyconfigs:1;/opt/apps/develop/easybuild-easyblocks:1;/opt/apps/develop/easybuild-framework:1
__LMOD_REF_COUNT__LMFILES_ = /opt/apps/develop/modules/EasyBuild-develop:1
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