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Metalnx Install notes

Environment

Centos (7.6) VM

Metalnx source: https://github.com/irods-contrib/metalnx-web

docker image: docker pull diceunc/metalnx

Customisation

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curl -s -XGET 'localhost:9200/irods_audit/_search?pretty' -H 'Content-Type: application/json' -d'
{
     "_source": [ "@timestamp", "user_user_name", "obj_path" ],
     "sort" : [
         {"@timestamp":{"order": "asc"}}
     ],
     "size" :10000,
     "query": {
         "bool":  {
             "must": [

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-bash-4.2$ ils -l
/tempZone/home/rods/testirodsgit:
  rods              0 rnd0;st_ufs0    104857600 2018-09-24.14:53 & testfile
  rods              0 rnd0;st_ufs0    104857600 2018-09-24.15:09 & testfile.1
-bash-4.2$ git annex init
init  ok
(Recording state in git...)


-bash-4.2$ git-annex initremote REMOTIRODSFOLDER1 type=external externaltype=irods directory=/tempZone/home/rods/testirodsgit encryption=none

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Environment 
[root@145 ~]# cat /etc/redhat-release 
CentOS Linux release 7.3.1611 (Core) 

install cockroach db 

wget -qO- https://binaries.cockroachdb.com/cockroach-v2.0.4.linux-amd64.tgz | tar  xvz
cp -i cockroach-v2.0.4.linux-amd64/cockroach /usr/local/bin

Add the renci repo 

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Create a 5GB test file:

$ dd if=/dev/zero of=maketest.dat bs=1M count=5001
5001+0 records in
5001+0 records out
5243928576 bytes (5.2 GB) copied, 4.40052 s, 1.2 GB/s

upload with verbose and progress option when the upload starts after 10% or so stop irods (have another windown open) 

rods$ sleep 5; iput -kvP maketest.dat

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irods-4.18 and lateest b2stage-gridftp. 

root# make
[ 10%] Building C object CMakeFiles/globus_gridftp_server_iRODS.dir/DSI/globus_gridftp_server_iRODS.c.o
/home/rods/iRODS_DSI/B2STAGE-GridFTP/DSI/globus_gridftp_server_iRODS.c: In function globus_l_gfs_iRODS_start:
/home/rods/iRODS_DSI/B2STAGE-GridFTP/DSI/globus_gridftp_server_iRODS.c:706: error: too few arguments to function clientLogin
make[2]: *** [CMakeFiles/globus_gridftp_server_iRODS.dir/DSI/globus_gridftp_server_iRODS.c.o] Error 1
make[1]: *** [CMakeFiles/globus_gridftp_server_iRODS.dir/all] Error 2
make: *** [all] Error 2

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# CONFIG
rods$ cat /etc/gridftp.conf 
# globus-gridftp-server configuration file

# this is a comment

# option names beginning with '$' will be set as environment variables, e.g.
$GLOBUS_ERROR_VERBOSE 1
$GLOBUS_TCP_PORT_RANGE 50000,51000

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2017-03-29T09:18:17Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:18:28Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:18:53Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:19:06Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:19:19Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:20:11Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:20:34Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:21:01Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:21:37Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
2017-03-29T09:21:48Z E! ERROR: input [inputs.diskio] took lon

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2017-03-29T08:42:25Z I! Starting Telegraf (version 1.2.1)
2017-03-29T08:42:25Z I! Loaded outputs: influxdb
2017-03-29T08:42:25Z I! Loaded inputs: inputs.disk inputs.mem inputs.swap inputs.system inputs.net inputs.ntpq inputs.cpu inputs.kernel inputs.processes inputs.diskio
2017-03-29T08:42:25Z I! Tags enabled: host=dmf
2017-03-29T08:42:25Z I! Agent Config: Interval:10s, Quiet:false, Hostname:"dmf", Flush Interval:10s 
2017-03-29T08:44:28Z E! ERROR: input [inputs.diskio] took longer to collect than collection interval (10s)
SIGQUIT: quit
PC=0x464071 m=0

goroutine 0 [idle]: