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boegelbot/easybuild_test_report_11660_easybuilders_preasybuild-easyconfigs_20205210-UTC-20-52-35.md

Created November 10, 2020 20:52
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EasyBuild test report for easybuilders/easybuild-easyconfigs PR #11660
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easybuild_test_report_11660_easybuilders_preasybuild-easyconfigs_20205210-UTC-20-52-35.md

Test report for easybuilders/easybuild-easyconfigs#11660

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in total)

Overview of tested easyconfigs (in order)

  • SUCCESS scikit-bio-0.5.6-foss-2020a-Python-3.8.2.eb

Time info

  • start: Tue, 10 Nov 2020 20:50:17 +0000 (UTC)
  • end: Tue, 10 Nov 2020 20:52:35 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 4.3.2.dev0-r27b8362ce370938867700c9fdaa3b4e0671994e8
  • easybuild-easyblocks version: 4.3.2.dev0-r8594e0b3ae381bf5ab7ecd6d06babea945015fd1
  • command line:
eb --from-pr 11660 --debug --rebuild --robot --upload-test-report
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/boegelbot'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/users/boegelbot/CentOS8/haswell/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='warn'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-force
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-trace
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--fixed-installdir-naming-scheme
--from-pr='11660'
--generate-devel-module
--github-user='boegelbot'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/users/boegelbot/CentOS8/haswell'
--job-backend='GC3Pie'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/users/boegelbot/boegelbot'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='warn'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/users/boegelbot/CentOS8/haswell/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/users/boegelbot/CentOS8/haswell'
--rebuild
--repository='FileRepository'
--repositorypath='/users/boegelbot/CentOS8/haswell/ebfiles_repo'
--robot-paths=''
--robot='/users/boegelbot/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--sourcepath='/users/boegelbot/CentOS8/haswell/sources:/shared/maintainers/sources'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

  • core count: 4
  • cpu arch: x86_64
  • cpu arch name: haswell
  • cpu model: Intel(R) Xeon(R) CPU E5-2667 v3 @ 3.20GHz
  • cpu speed: 3196.298
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.3.1 20191121 (Red Hat 8.3.1-5) (GCC) ;
  • glibc version: 2.28
  • hostname: generoso-c1-s-2
  • os name: centos linux
  • os type: Linux
  • os version: 8.2.2004
  • platform name: x86_64-unknown-linux
  • python version: 3.6.8 (default, Apr 16 2020, 01:36:27) ; [GCC 8.3.1 20191121 (Red Hat 8.3.1-5)]
  • system gcc path: /usr/bin/gcc
  • system python path: None
  • total memory: 15873

List of loaded modules

  • (none)

Environment

BASH_ENV = /apps/modules/lmod/lmod/init/bash
BASH_FUNC_ml%% = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module%% = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CPATH = /apps/slurm/default/include:/apps/modules/lua/5.3.5/include:/opt/git/include:/apps/slurm/default/include:/apps/modules/lua/5.3.5/include:/opt/git/include
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/5010/bus
EASYBUILD_BUILDPATH = /tmp/boegelbot
EASYBUILD_GITHUB_USER = boegelbot
EASYBUILD_PREFIX = /users/boegelbot/CentOS8/haswell
EASYBUILD_SOURCEPATH = /users/boegelbot/CentOS8/haswell/sources:/shared/maintainers/sources
EB_ARGS = 
EB_PR = 11660
EB_PYTHON = python3
EB_SCRIPT_PATH = /users/boegelbot/easybuild/easybuild-framework/eb
EDITOR = vim
ENVIRONMENT = BATCH
FANCYLOGGER_IGNORE_MPI4PY = 1
GCC_COLORS = error=01;31:warning=01;35:note=01;36:caret=01;32:locus=01:quote=01
GITHUB_APP_SECRET_TOKEN = ihKLdXYye8EdDTiZCo1qMpCCYZqTnzk9EG3FB80jHiiUtMkIC8lgbVUtCyDQSPyGlVrunGm3NICRuekRfJw63jjgYJ3Dodm6tImY1x4n1ctEGbVmFczUYvF496AOxGWn
HISTCONTROL = ignoredups
HISTFILESIZE = 100000000
HISTSIZE = 1000000
HISTTIMEFORMAT = %F %T 
HOME = /users/boegelbot
HOSTNAME = generoso-c1-s-2
INTEL_LICENSE_FILE = /shared/maintainers/licenses/intel.lic
LANG = en_US.UTF-8
LD_LIBRARY_PATH = /apps/slurm/default/lib:/opt/git/lib/lib:/apps/slurm/default/lib:/opt/git/lib
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBRARY_PATH = /apps/slurm/default/lib:/opt/git/lib:/apps/slurm/default/lib:/opt/git/lib
LMOD_CMD = /apps/modules/lmod/lmod/libexec/lmod
LMOD_DIR = /apps/modules/lmod/lmod/libexec
LMOD_PKG = /apps/modules/lmod/lmod
LMOD_ROOT = /apps/modules/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_VERSION = 8.3.13
LMOD_sys = Linux
LOGNAME = boegelbot
LS_COLORS = 
LUAROCKS_PREFIX = /apps/modules/lua/luarocks/3.2.1
LUA_CPATH = /apps/modules/lua/5.3.5/lib/lua/5.3/?.so;/apps/modules/lua/luarocks/3.2.1/lib/lua/5.3/?.so;;
LUA_PATH = /apps/modules/lua/5.3.5/share/lua/5.3/?.lua;/apps/modules/lua/5.3.5/share/lua/5.3/?/init.lua;/apps/modules/lua/luarocks/3.2.1/share/lua/5.3/?.lua;/apps/modules/lua/luarocks/3.2.1/share/lua/5.3/?/init.lua;;
MAIL = /var/spool/mail/boegelbot
MANPATH = /apps/slurm/default/share/man:/opt/git/share/man:/apps/slurm/default/share/man:/apps/modules/lmod/lmod/share/man:/opt/git/share/man
MODULEPATH = /shared/easybuilder/CentOS8/haswell/modules/all:/apps/modules/modulefiles/Linux:/apps/modules/modulefiles/Core:/apps/modules/lmod/lmod/modulefiles/Core
MODULEPATH_ROOT = /apps/modules/modulefiles
MODULESHOME = /apps/modules/lmod/lmod
OLDPWD = /users/boegelbot
PATH = /users/boegelbot/easybuild/easybuild-framework:/users/boegelbot/.local/bin:/users/boegelbot/.local/bin:/apps/slurm/default/bin:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/users/boegelbot/easybuild/easybuild-framework:/users/boegelbot/.local/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin
PROMPT_COMMAND = history -a; history -c; history -r
history -a; history -c; history -r
PWD = /users/boegelbot/boegelbot
PYTHONOPTIMIZE = 1
PYTHONPATH = /users/boegelbot/easybuild/easybuild-framework:/users/boegelbot/easybuild/easybuild-easyblocks:/users/boegelbot/easybuild/easybuild-easyconfigs
SHELL = /bin/sh
SHLVL = 6
SINFO_FORMAT = %9P %5a %8s %.10l %.6c %.6z %.7D %10T %N
SLURMD_NODENAME = generoso-c1-s-2
SLURM_CLUSTER_NAME = generoso
SLURM_CONF = /apps/slurm/20-02-1-1/etc/slurm.conf
SLURM_CPUS_ON_NODE = 4
SLURM_GET_USER_ENV = 1
SLURM_GTIDS = 0
SLURM_JOBID = 9735
SLURM_JOB_CPUS_PER_NODE = 4
SLURM_JOB_GID = 5011
SLURM_JOB_ID = 9735
SLURM_JOB_NAME = test_PR_11660
SLURM_JOB_NODELIST = generoso-c1-s-2
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = normal
SLURM_JOB_UID = 5010
SLURM_JOB_USER = boegelbot
SLURM_LOCALID = 0
SLURM_MEM_PER_CPU = 3499
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = generoso-c1-s-2
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 4
SLURM_NTASKS = 4
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SUBMIT_DIR = /users/boegelbot/boegelbot
SLURM_SUBMIT_HOST = generoso
SLURM_TASKS_PER_NODE = 4
SLURM_TASK_PID = 690158
SLURM_TIME_FORMAT = relative
SLURM_TOPOLOGY_ADDR = generoso-c1-s-2
SLURM_TOPOLOGY_ADDR_PATTERN = node
SLURM_WORKING_CLUSTER = generoso:generoso:6817:8960:101
SQUEUE_FORMAT = %.8i %.8u %.50j %.3t %9r %10S %.10M %.10L %.5D %.4C
TMPDIR = /tmp
USER = boegelbot
XDG_RUNTIME_DIR = /run/user/5010
XDG_SESSION_ID = 5175
_ = /usr/bin/python3
_ModuleTable001_ = 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
_ModuleTable002_ = dWxlZmlsZXMvQ29yZSIsfQ==
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_MODULEPATH = /shared/easybuilder/CentOS8/haswell/modules/all:1;/apps/modules/modulefiles/Linux:1;/apps/modules/modulefiles/Core:1;/apps/modules/lmod/lmod/modulefiles/Core:1
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